Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00473 ATGGCTGAGTTGAGTAGTACGATGCAAGAGCACGGGACGGGCAACAATGGCGATCGCTCTGCAGAGGGGGTTCAGTGGGAGAGGTTTCTGCCGCGGATGGTGCTCAGAGTCCTGCTTGTAGAAGCTGATCATTCCACTCGACAAATCATCGCTGCGCTTCTTCGCAAATGCAGTTACACAGTTATTGCGGTTCCAGACGGATTAAAGGCATGGGAGTTGTTGAAGAAGAACGCGTCCGAGCTAGATCTCATAATAACTGAAGTGGATCTGCCAGCAATATCTGGATTTTCCCTTCTTTCTTTAATCATGGAACATGAAATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCTGCTGATTTTCTTATAAAACCTATTCGGAGGAATGAACTAGGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTAGTAGCACTCCTGCTCCAATTACAACATTTTCACCAAAAAATCTTGAAACTGCCTCCGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCCGTTGCCTCCTCTAAGGAAAACAACGAATACAGTGAGAGATTAAGTGAGGCTCAAGACGTGCCCCAGCTGAAAAGGTCTAAACAGCAGAAAATTGATTTGAAGTATGAAAAGTTTACCAGATTTGAAAGTGAATCAACTAAGATGGATAATGAAACAAGAGATAATTCAATTATAATTGTATCAGACAATGCAGGGTGCGACAAAACTTTTGAATCGGCAGATTTAAGGCTACAACAAGACCATGGCTGTGCTGATACTGAAATTGAGGTTGAAATCTTAAAATCTGATTTAGGCATAGGAGATTCTAATATTAGTTCTGAGTTGCATGGATGCAGTGATGAAGGGGTGAAACCTATTAAAGGAGCTATTGACTTGATTGCAACATTTGGAAATCTTCCAAAGCACCCTGATGAAAACTGTAGTTTTAATGGTGGTAATACAACCATGTTTTATGGTGTTACGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGAAGTTCATGTAAACAAGCAAGCGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCAAACACCTCTGCGTTTTCTTGGTATAGTAATAGTAAATTGGTGCACCCTCTTTTTCGAACACCATCAATTACATCCGCCGAAGTAAACAACCCCAGTTGGGATTCTCACGAATCCCATAAATTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATAAAAACCTGGAGAATATGATCGGTACGGTCATTGATCAGTATGGACAAGTTAAGCCAAAATTATCAAACAGTCAATGTGGAATGTTACCTGTTTCAGGGGTTGTTTCCGATCTTAAGTCCAAGGGACATGGTAATGTTTTCACTTCAGTGTTCTACGCAACATCTGGTACTCACCCTGTGTGGAGTCCGAAACCAGTCTGCCAGAACGAGAGTTCTCCCTTTCCCACAAGTACCTCCTCCCAGTCCAATCCTGAAAGTCACAACTCTGACCAATATCATGAATATTCCAATGATGCTACTTGTCTTAATCAAAATGTAAAGGAAGACACTGATTTGGATCAGGCAAGGCGTGATTCTCCTGCTGCTGATCAGAGTGCTGGTAATAGTTTATGCCATGATGCTTCATATCATGTCAACAGTAGTGCGTATGGAAGCATGGACAGTGGAAATGATGGGCATGCTACTTCAGCTATAGTATCCAAGAACAACCCAGAAGTTTTCAGCGATAGTGTTTGTCATAATTATGATGGGTCTCGAGGCACAGAATCTCATCACACTAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGACTGAAGCGGAAAGAGCGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGGCTGGCAGAGCAGCGTCCTCGGGTCAAAGGGCAGTTTGTTCGCCAAGTACACAATGATCATCCAGTTGCTGATGCCGGTGGTGATTCATGA 2028 0.4216 MAELSSTMQEHGTGNNGDRSAEGVQWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWELLKKNASELDLIITEVDLPAISGFSLLSLIMEHEICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPIRRNELGNLWQHVWRRHASSTPAPITTFSPKNLETASEDNSASNKSSGSVASSKENNEYSERLSEAQDVPQLKRSKQQKIDLKYEKFTRFESESTKMDNETRDNSIIIVSDNAGCDKTFESADLRLQQDHGCADTEIEVEILKSDLGIGDSNISSELHGCSDEGVKPIKGAIDLIATFGNLPKHPDENCSFNGGNTTMFYGVTQLELSLRSDFPGSSCKQASEATEESQRLNHSNTSAFSWYSNSKLVHPLFRTPSITSAEVNNPSWDSHESHKLSRTTSGNCCQYGGSNKNLENMIGTVIDQYGQVKPKLSNSQCGMLPVSGVVSDLKSKGHGNVFTSVFYATSGTHPVWSPKPVCQNESSPFPTSTSSQSNPESHNSDQYHEYSNDATCLNQNVKEDTDLDQARRDSPAADQSAGNSLCHDASYHVNSSAYGSMDSGNDGHATSAIVSKNNPEVFSDSVCHNYDGSRGTESHHTSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVADAGGDS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00473 675 CDD psREC_PRR 37 140 - -
Vian9g00473 675 SUPERFAMILY CheY-like 35 161 IPR011006 -
Vian9g00473 675 MobiDBLite consensus disorder prediction 198 217 - -
Vian9g00473 675 MobiDBLite consensus disorder prediction 1 20 - -
Vian9g00473 675 MobiDBLite consensus disorder prediction 608 622 - -
Vian9g00473 675 MobiDBLite consensus disorder prediction 164 197 - -
Vian9g00473 675 Pfam Response regulator receiver domain 37 146 IPR001789 GO:0000160
Vian9g00473 675 MobiDBLite consensus disorder prediction 493 523 - -
Vian9g00473 675 Gene3D - 33 268 - -
Vian9g00473 675 MobiDBLite consensus disorder prediction 600 622 - -
Vian9g00473 675 ProSiteProfiles CCT domain profile. 619 661 IPR010402 GO:0005515
Vian9g00473 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 328 IPR045279 GO:0009736
Vian9g00473 675 MobiDBLite consensus disorder prediction 164 217 - -
Vian9g00473 675 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Vian9g00473 675 SMART REC_2 35 150 IPR001789 GO:0000160
Vian9g00473 675 Pfam CCT motif 619 661 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00473 Vian-Chr9 4860304 4864799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00473 582 663 Response Regulator Gene Family AT5G24470 54.878 1.12e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vian9g00473 Response_reg 5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00473 K12130 - gmx:100791698 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00473 9 4860304 4864799 Vian9g00473 9 4860304 4864799 ECH