Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00471 ATGGAGAGGCTCCAAGGACCCCTCAATTCCTATTTCATTGGAGACCCCCTGGGAGTGAATTGTTTGGACCAAGTTCTGGTTGACGAAGAGACCCTGAGACTAGAGGAGGAAGAACAGCTTCTGATATCAAGTTTAGAGGACAAGATGCCTTTTCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAACTTTCAAACACTTCTGAGGCTGCAGCACATTACGAAACCATGGGAGGGAATGGCCTATGTTCCAAGAATGGAAGCACAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCGGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCATTTTCGTGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACACAAAGTATCACAATCATGCCCCAAATCTCAGCCAGCAACCACAAGGGAAAGGCGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACACGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGGCGCCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGTGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCTCGGTGTTGTGTAAGCTCCCTCCAACACCGTCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAGCTAGTGAGGAAGTGAGCTGTGGAGATGAGATGAAAGCAGAAAACAAGTCAGAGGCAGCAGATATAAAAGTGACTTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAAACCAGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTAAGGCTTACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGGCTGTAGCCTACTTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGAGCTAGACACCACTAG 1158 0.4594 MERLQGPLNSYFIGDPLGVNCLDQVLVDEETLRLEEEEQLLISSLEDKMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHITKPWEGMAYVPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSFSCVEKVSYECNQEPHKVSQSCPKSQPATTRERRKRKRTRPSKNTEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSSVLCKLPPTPSSSSPHGYGMRSSASEEVSCGDEMKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEGCSLLSASDIAEAVHHIFNFINGARHH 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00471 385 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Vian9g00471 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 247 IPR036638 GO:0046983
Vian9g00471 385 FunFam Basic helix-loop-helix transcription factor 171 246 - -
Vian9g00471 385 CDD bHLH_AtFAMA_like 183 256 - -
Vian9g00471 385 Coils Coil 228 248 - -
Vian9g00471 385 MobiDBLite consensus disorder prediction 144 181 - -
Vian9g00471 385 MobiDBLite consensus disorder prediction 245 278 - -
Vian9g00471 385 MobiDBLite consensus disorder prediction 250 275 - -
Vian9g00471 385 SMART finulus 186 237 IPR011598 GO:0046983
Vian9g00471 385 PANTHER TRANSCRIPTION FACTOR FAMA 119 376 IPR044283 GO:0003700|GO:0010052
Vian9g00471 385 Gene3D - 171 248 IPR036638 GO:0046983
Vian9g00471 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00471 Vian-Chr9 4787074 4789349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00471 39 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.642 1.45e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00471 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00471 - - gmx:100789928 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00471 9 4787074 4789349 Vian9g00471 9 4787074 4789349 ECH