Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00459 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAAGAGGAAGAGGAGACAGCAGAAGAAATCGTCACAAGAGAAGAAAGCAGCAGGTTGTTACACCAGGATGCAGCAGCTTCCAATTTCGTCATCGGCAATCATCATAATCATCATCATCATCATCACCACACAACAAAGCAGCTAGATTTCATGGACTTGACACTGGGGAGCAGCAAGGACGAGGGGAATTTGCAAGGATCGGGAGGTGCTGCTTCTTCTGTGTTTGGTCATCATGCAAGTGGTAGTTCTTCTGCCGATGGTAACGTTAACAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACACCGAGTGATGTGGGTAAGCTGAACCGATTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGTTGCTGCTCAATTTTGAGGACAGAAATGGTAAGTCATGGAGGTTCAGGTACTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTAGGGGATTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCACCATCACCACCATGGCCCTGACCCTTCAGCCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCAACACTTCATCAGATGGGGTGCCACTGGAAGATTCTACTCCCTCCCCTCGCCAAACCCACCACGCCACCATGACCATTTGCAACAACACCTCAATTACAACACCATGTATCATCAACATCATCATCCCTTTCATCACCAATTGCAAGGTGCTGCTGGTGCTGGAGGAAATGGAACTCATCACTACAACAACTATCATGACATGAGTAGTTCAGGATCTGGCTCGGTCTATTACCTCAGGTCAACACCCCCACCAATGCCATTCACTGATCACCAAACCTTGAACACAAGACAACAACAACAAGAGGGAGGCAATGTTTCTCATCCTCCTATAATCATTGATTCTGTTCCAGTTGCTCACCACCACCATCATCACCAGCACCACCGTGGTGGCAAGAGTGGTGGTTCTAGTACTAGTACAAGTCCTAGCACTGCAGGCAAAAGACTTAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGACCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGCGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGAACAACCTTCAATGCTTTTTGATCTGGATCCTTCTTTGCAATACCGGCAGTGA 1443 0.4733 MELMQEVKGYSDSREEEEEEETAEEIVTREESSRLLHQDAAASNFVIGNHHNHHHHHHHTTKQLDFMDLTLGSSKDEGNLQGSGGAASSVFGHHASGSSSADGNVNNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLYRHRLYIDWRRRPDHHHHHGPDPSATLFTPFFLPNQQHFIRWGATGRFYSLPSPNPPRHHDHLQQHLNYNTMYHQHHHPFHHQLQGAAGAGGNGTHHYNNYHDMSSSGSGSVYYLRSTPPPMPFTDHQTLNTRQQQQEGGNVSHPPIIIDSVPVAHHHHHHQHHRGGKSGGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHATMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEQPSMLFDLDPSLQYRQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00459 480 MobiDBLite consensus disorder prediction 77 118 - -
Vian9g00459 480 SMART B3_2 118 223 IPR003340 GO:0003677
Vian9g00459 480 MobiDBLite consensus disorder prediction 1 34 - -
Vian9g00459 480 MobiDBLite consensus disorder prediction 426 461 - -
Vian9g00459 480 Gene3D - 112 230 IPR015300 -
Vian9g00459 480 ProSiteProfiles B3 DNA-binding domain profile. 118 223 IPR003340 GO:0003677
Vian9g00459 480 FunFam B3 domain-containing protein 111 231 - -
Vian9g00459 480 Pfam B3 DNA binding domain 118 222 IPR003340 GO:0003677
Vian9g00459 480 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 419 IPR044800 GO:0003700
Vian9g00459 480 SUPERFAMILY DNA-binding pseudobarrel domain 114 219 IPR015300 -
Vian9g00459 480 MobiDBLite consensus disorder prediction 426 480 - -
Vian9g00459 480 CDD B3_DNA 116 205 IPR003340 GO:0003677
Vian9g00459 480 MobiDBLite consensus disorder prediction 77 112 - -
Vian9g00459 480 MobiDBLite consensus disorder prediction 335 352 - -
Vian9g00459 480 MobiDBLite consensus disorder prediction 335 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00459 Vian-Chr9 4595333 4597000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00459 109 407 RAV Transcription Factor Family AT2G46870 49.000 2.41e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian9g00459 B3 2.1e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00459 K09287 - gmx:100778733 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00459 9 4595333 4597000 Vian9g00459 9 4595333 4597000 ECH