Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00454 ATGGAGATTGTAGGAATGGGTTTTCGTCCCACAGATGAAGAACTTGTCGACTTTTACCTCAAACACAAGTTGCTCGATGATGATCCCCTTGTCCATGTCTTGACTGACATAGATCTTTCCGACGTGGAACCTTGGGAAATACCAGAGATGTTAGCAAAATCAGTAATAGCATTCAAAACCTCAGAATGGTTTTTCTTCAGTCCTGTTAATTTGAAGTACTCAAATAGTAAAAGGTTTAAAAGGACAACCAAGAGTGGGTTCTGGAAACCAACGGGAAAACCCCGTGATGTTAGAACAGGGGACACCGATACTGTCATTGGGACTAAGAAGACTCTTGTTTTCCAAAGTGGTCATGTTTCCAAAGGTGTCACTGTCAAATCCAACTGGGTTATTCACGAATATCATGCTCTTAACTTTCTCCAAAGCCAGAATGCTTTTGTGTTATGCCGCTTGAAAAAGAAACATGGGAAAACGACCGAAGGAGGAACTGCTGCACTGATCTCTGATGAAGAGGAATCCAGTAGAAGTGTGGTTTCTGACAATGAACATCAGGCAATAGCAGAAGGAGTTCCATCTGGAGGTACTTTTACCGGAATGGAAACAATCTGTCAGGCAAAACATCAGGCGGAAAAATGCATCTCCCCAATCGAACAGTCACTAATTGAATTTGAGAAAGATGACGATGCCTATTTTAGAAATGAAAATAACATTAGGCAGATTCCTTGTGAAACTATGCAAACTGTTTGTGAAATCACACAAATTTCTTTTGAAAGTTTGCAGATTCGCCATGAATTTATGCAGACTCCTTATGAAACTATGCAAGTTTCTTGTGAAACTATGCATATTCCTTGTGAAACTATGCAAATTCCATGTGAAAGTATAGAAGCTCCTAGTGAAACTATACAGGTTCCTAGTGAAACTATACAGATTCCTTCCTTTTGTAAGTATGCAGACCCCATTAGATACTAA 969 0.3963 MEIVGMGFRPTDEELVDFYLKHKLLDDDPLVHVLTDIDLSDVEPWEIPEMLAKSVIAFKTSEWFFFSPVNLKYSNSKRFKRTTKSGFWKPTGKPRDVRTGDTDTVIGTKKTLVFQSGHVSKGVTVKSNWVIHEYHALNFLQSQNAFVLCRLKKKHGKTTEGGTAALISDEEESSRSVVSDNEHQAIAEGVPSGGTFTGMETICQAKHQAEKCISPIEQSLIEFEKDDDAYFRNENNIRQIPCETMQTVCEITQISFESLQIRHEFMQTPYETMQVSCETMHIPCETMQIPCESIEAPSETIQVPSETIQIPSFCKYADPIRY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00454 322 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
Vian9g00454 322 Pfam No apical meristem (NAM) protein 4 135 IPR003441 GO:0003677|GO:0006355
Vian9g00454 322 Gene3D NAC domain 11 159 IPR036093 GO:0003677|GO:0006355
Vian9g00454 322 ProSiteProfiles NAC domain profile. 2 154 IPR003441 GO:0003677|GO:0006355
Vian9g00454 322 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00454 Vian-Chr9 4495521 4497117 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00454 4 154 NAC Transcription Factor Family AT3G49530 43.590 1.33e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian9g00454 NAM 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00454 - - vra:106778154 516.924