Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00452 ATGTCTCATTCAACCTACAAACACAGATTTCAGTGTTCACCAAAATCAATGGATAAAATTGTTGGTGTCGGTTTCCGTCCTACGGAACAAGAGCTCGTCGATTTCTACCTCAAACACAAGTTGCTGGCTGATGATTCCGGTGTCGACGTTATCCCTGTCATTGATCTCTGCCAAGTAGAACCTTCCGATGTACCAGGGATGCTTGCAAAATCACGGATACGATTTGGTAACCCAGACTGGTTTTTCTTTAGTCCGGTCGATTTCAAGTATGCAAACAGTAAAAGGGTTAACAGGAAAACAGAGAAAGGATTCTGGAAAGCCACTGGAAAAGACCGTGATATTAGGAGCTGGAACAACAACACACTGATTGCCACAAAGAAGACTCTTGTATACTACACAGGAAGTGTTTCCTGTGGTGTCAAGTCCATCTGGGTTATTCACGAATATCACGCTGTTACCTTTCATGAAAGCAAGAGGTATTTTGTTTTATGCCGCTTGATGAGGAAATCTGGGAAAACAACTGAAGGGGGAACCGATCCAGTAGTCTGTGGTGAAGAGGAGCCCAGTGAACTCAATGTTTCTGACTACGAAAATCAGGCAACATCTAAAGAAATTCCATCTGGAGGTAAGGTTACAGGAGCGGAACCAATCTTTCAGGCTAACTCTCAGTCAGAGACATACGTCTCCCAAATACCACAGTCTTCAACAGAAGAAGCATCATCTTTTCCTGATTATCCATCAAACAATGCCTATTTTAGAAATGAAAATTGTTTTATACAATTTTCATCTAAAATTACAAAGGAAGATGAGTTTCTAAATCGAATTATAGCTGACGAAAATTTAGATATTGACGAAGATAATATCTATACTTTTGTCAATAATTCCATCCGAAAGGATACAAATATTATGGATAGTTCGTCTATTTATAATGAATATTCTAATAATGAGGAATACCATTCATCAAAAAGATTTAAATTATCCGAAGATGTTATCGATGATGCATCATCAAATCAAGAAACAAAGAAGAGTATGATTTTAGATAATTTTTGTGGAATGGAATCATCTTCTTGTGACTCAGCTTTAGAGATTAATTATATCGAAACTTCTAGTTCTCAGTCTATTTCATAA 1128 0.375 MSHSTYKHRFQCSPKSMDKIVGVGFRPTEQELVDFYLKHKLLADDSGVDVIPVIDLCQVEPSDVPGMLAKSRIRFGNPDWFFFSPVDFKYANSKRVNRKTEKGFWKATGKDRDIRSWNNNTLIATKKTLVYYTGSVSCGVKSIWVIHEYHAVTFHESKRYFVLCRLMRKSGKTTEGGTDPVVCGEEEPSELNVSDYENQATSKEIPSGGKVTGAEPIFQANSQSETYVSQIPQSSTEEASSFPDYPSNNAYFRNENCFIQFSSKITKEDEFLNRIIADENLDIDEDNIYTFVNNSIRKDTNIMDSSSIYNEYSNNEEYHSSKRFKLSEDVIDDASSNQETKKSMILDNFCGMESSSCDSALEINYIETSSSQSIS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00452 375 SUPERFAMILY NAC domain 14 169 IPR036093 GO:0003677|GO:0006355
Vian9g00452 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 286 - -
Vian9g00452 375 Gene3D NAC domain 28 174 IPR036093 GO:0003677|GO:0006355
Vian9g00452 375 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vian9g00452 375 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00452 Vian-Chr9 4486706 4488692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00452 16 169 NAC Transcription Factor Family AT4G35580 45.625 4.97e-38 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian9g00452 NAM 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00452 - - var:108346924 759.985