Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00441 ATGGTGTTGGATCCAAGGCTGGTGCTGTTAGTGTTCATCAGCACCTGCATTTTGGCCATTGATGGTGACACAGATTCAAATGACGCTGGTGCTCTGAGGGCTATGTTTCAAAGTATGAACTCACCATCTCAGCTAAATTGGAATGGGGCAGATCCTTGTGGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAATCCTTGTCATCGGTTACAAACCTAGACATGAGTAATAATAATCTTGGTGGCTCCATACCGTACCAACTTCCTCCTAGTCTGCAGTACTTAAATCTTGCCAATAATAATTTCAATGGGCAGATCCCTTATTCTCTTTCTCAAAAGGCTTCGCTTATTGTCCTGAATCTCGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAAGCTTTCTTCCCTCTCTACATTGGATCTCTCATTCAATTCTTTTACAGGTGACCTGCCTCAGACTTTGAGCTCACTTTCTAGCATAAGCACCATGTATCTGCAAAACAACCAGTTTACAGGCACCATTAATGTCCTTGCTAATCTGCCTCTGGAAACTCTAAAGGATGGTAATGATTGGAGCTCAGGACCTGCACCCCCACCTCCTCCTGGGACACCTCCAGTAGTACCAAGAAATCGAAATCACAAATCTGGGGGACATACCCCATCAGATGCTGGCTCAAGTGACGATGGAGGCAAAAAATCTGGTATTGGAGGTGGTGGCATTGCTGGAATAGTAATCTCCATCCTGGTTGTTGCGGCAGTAGTGGCATTCTTTCTGGTGAAGAAAAGATCTAAAAAGTCGTCTGGTGATATTGAAAAGCTTGACAATCAACCCTTGGCTCCTCATACTTCACATCATCATGAAATGAATGCCCTGCAAACTTCATCTGTAACTGACTTGAATACATTTGATACACCTACGGCCCCGATAAGTCTTAAACCTCCACCTTTTGATCGCCATAAATCATTTGACGAGGATGAGTTTTCAGTGAAGCCCGCCACTGTCATTAAGCCCACTACAGTGAAGAAGAACGTCACAGCTCCTACAAATGTAAAATCTTATTCTGTAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTATTGGTGAGGGGTCTTTTGGACGTGTATATCGAGCTCAATTTGATGATGGAAAGGTTCTTGCTGTTAAGAAGATAGATTCCTCTGTCCTTCCTAATGATTTGTCTGATGATTTTGTGGAACTGGTTTCAAGCATATCCCATTTGCACCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCATGGACAGCACTTACTAGTCTACGAGTTTCATAAAAACGGATCACTGCATGACTTCCTCCACCTACCTGACGACTATAGTAAACCATTGATATGGAATTCACGCGTGAAGATTGCCTTGGGGATTGCACGTGCTTTAGACTCAAGGCCAAGGTCTGAGCAGGGTTTGGTTCGATGGGCAACACCTCAACTCCATGATATCGATGCTCTGGCTAAAATGGTTGATCCTGCATTAGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCAGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGTTCGATTAGTGCAGCGAACTAACATGAGTAAGAGGACGACGTTTGTAACTGATCAAGGAGTATCCAACCGAGGGGGAGATAACCAAGAATCACAAGACATGTAA 1821 0.4437 MVLDPRLVLLVFISTCILAIDGDTDSNDAGALRAMFQSMNSPSQLNWNGADPCGQSWQGITCSGNRVTEIKLPGRSLSGSLGYQLESLSSVTNLDMSNNNLGGSIPYQLPPSLQYLNLANNNFNGQIPYSLSQKASLIVLNLGHNQLQQALNVDFQKLSSLSTLDLSFNSFTGDLPQTLSSLSSISTMYLQNNQFTGTINVLANLPLETLKDGNDWSSGPAPPPPPGTPPVVPRNRNHKSGGHTPSDAGSSDDGGKKSGIGGGGIAGIVISILVVAAVVAFFLVKKRSKKSSGDIEKLDNQPLAPHTSHHHEMNALQTSSVTDLNTFDTPTAPISLKPPPFDRHKSFDEDEFSVKPATVIKPTTVKKNVTAPTNVKSYSVADLQIATGSFSVDQLIGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDLSDDFVELVSSISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDDYSKPLIWNSRVKIALGIARALDSRPRSEQGLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTTFVTDQGVSNRGGDNQESQDM 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00441 606 ProSitePatterns Protein kinases ATP-binding region signature. 396 419 IPR017441 GO:0005524
Vian9g00441 606 MobiDBLite consensus disorder prediction 586 606 - -
Vian9g00441 606 Gene3D Transferase(Phosphotransferase) domain 1 504 596 - -
Vian9g00441 606 SUPERFAMILY L domain-like 44 210 - -
Vian9g00441 606 Pfam Protein tyrosine and serine/threonine kinase 392 503 IPR001245 GO:0004672|GO:0006468
Vian9g00441 606 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 226 - -
Vian9g00441 606 Gene3D Ribonuclease Inhibitor 135 214 IPR032675 -
Vian9g00441 606 Gene3D Ribonuclease Inhibitor 27 134 IPR032675 -
Vian9g00441 606 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vian9g00441 606 MobiDBLite consensus disorder prediction 218 232 - -
Vian9g00441 606 Gene3D Phosphorylase Kinase; domain 1 353 467 - -
Vian9g00441 606 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 510 577 IPR046959 -
Vian9g00441 606 MobiDBLite consensus disorder prediction 212 257 - -
Vian9g00441 606 SUPERFAMILY Protein kinase-like (PK-like) 369 504 IPR011009 -
Vian9g00441 606 ProSiteProfiles Protein kinase domain profile. 390 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00441 606 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Vian9g00441 606 MobiDBLite consensus disorder prediction 292 311 - -
Vian9g00441 606 SUPERFAMILY Protein kinase-like (PK-like) 522 575 IPR011009 -
Vian9g00441 606 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 356 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00441 Vian-Chr9 4353930 4361737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00441 505 588 Strubbelig Receptor Gene Family AT1G53730 90.476 3.51e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vian9g00441 PK_Tyr_Ser-Thr 1.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00441 - - gmx:100780323 794.653