Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00436 ATGGGTTCAACTCCGACCGCCGTGTCTGATGACAACTCATTGGGTGAATCTGATACGATTGAGATAACTGGGAAGGTCATGGTGGTGGCTATAATATTCCTTTTCATGGTGGTTGTGTTTGTTCTTGTTCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGGGGAGAACGCCGCCCCTCAGCCTCGCCAGCGGCGGCGGAGGCGCCGCCGGTTTGTCTTCGCCCCCGGGCAAGACCCGGTGGTCTATGAGAGTCACCAAGTTGGGCTTCACCCTTCAGTTTTAAAGTCCTTGCCAGTGTTGGTGTTCCAACCGGAGAACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTATTGAAGGGGAAAAGGCCAGGCTTTTGCCGAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTTTGAATCCTCTAAAACAAGTGAAGAGAATGATTTCTCAGGGAACACTGAAACATCATCATCATCATCAATTGAAGAGAATTCAGGTGCTATGAATGGTTTACAGTCTTCAATTTTTCCCACAAATGTGTTGGTTTGGGGGAACCACACACAAGTTAGTTCTTCTGGGGTTTCCTTGGAAGAGGAAGAAGGTAGTTCTCAGCAGCCAACTTCTCCTCCATCATCTACACCACTTGCTTCTTCTTCAGATGGTGGCAATGTTAATGGTAGATGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTCTATCCCCTTCTGGAAGTAGGTGTGTTGAAGATGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCCGGGACAAAAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGAACAAGCACAGAGCTAG 954 0.4675 MGSTPTAVSDDNSLGESDTIEITGKVMVVAIIFLFMVVVFVLVLHLYAKWFWWNMGENAAPQPRQRRRRRRRFVFAPGQDPVVYESHQVGLHPSVLKSLPVLVFQPENFKEGLECAVCLSEIIEGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGFESSKTSEENDFSGNTETSSSSSIEENSGAMNGLQSSIFPTNVLVWGNHTQVSSSGVSLEEEEGSSQQPTSPPSSTPLASSSDGGNVNGRCHGMLVIDIPSECTSSSLSPSGSRCVEDEVKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEQAQS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00436 317 CDD RING-H2_EL5-like 114 157 - -
Vian9g00436 317 SMART ring_2 115 156 IPR001841 -
Vian9g00436 317 SUPERFAMILY RING/U-box 95 163 - -
Vian9g00436 317 FunFam RING-H2 finger protein ATL3 83 162 - -
Vian9g00436 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 161 IPR013083 -
Vian9g00436 317 MobiDBLite consensus disorder prediction 215 248 - -
Vian9g00436 317 MobiDBLite consensus disorder prediction 264 283 - -
Vian9g00436 317 Pfam Ring finger domain 114 157 IPR001841 -
Vian9g00436 317 MobiDBLite consensus disorder prediction 215 252 - -
Vian9g00436 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 207 - -
Vian9g00436 317 MobiDBLite consensus disorder prediction 164 193 - -
Vian9g00436 317 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00436 Vian-Chr9 4305534 4306487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00436 21 300 C3H Transcription Factor Family AT1G53820 42.140 1.16e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00436 - - gmx:100775523 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00436 9 4305534 4306487 Vian9g00436 9 4305534 4306487 ECH