Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian9g00436 | ATGGGTTCAACTCCGACCGCCGTGTCTGATGACAACTCATTGGGTGAATCTGATACGATTGAGATAACTGGGAAGGTCATGGTGGTGGCTATAATATTCCTTTTCATGGTGGTTGTGTTTGTTCTTGTTCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGGGGAGAACGCCGCCCCTCAGCCTCGCCAGCGGCGGCGGAGGCGCCGCCGGTTTGTCTTCGCCCCCGGGCAAGACCCGGTGGTCTATGAGAGTCACCAAGTTGGGCTTCACCCTTCAGTTTTAAAGTCCTTGCCAGTGTTGGTGTTCCAACCGGAGAACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTATTGAAGGGGAAAAGGCCAGGCTTTTGCCGAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTTTGAATCCTCTAAAACAAGTGAAGAGAATGATTTCTCAGGGAACACTGAAACATCATCATCATCATCAATTGAAGAGAATTCAGGTGCTATGAATGGTTTACAGTCTTCAATTTTTCCCACAAATGTGTTGGTTTGGGGGAACCACACACAAGTTAGTTCTTCTGGGGTTTCCTTGGAAGAGGAAGAAGGTAGTTCTCAGCAGCCAACTTCTCCTCCATCATCTACACCACTTGCTTCTTCTTCAGATGGTGGCAATGTTAATGGTAGATGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTCTATCCCCTTCTGGAAGTAGGTGTGTTGAAGATGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCCGGGACAAAAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGAACAAGCACAGAGCTAG | 954 | 0.4675 | MGSTPTAVSDDNSLGESDTIEITGKVMVVAIIFLFMVVVFVLVLHLYAKWFWWNMGENAAPQPRQRRRRRRRFVFAPGQDPVVYESHQVGLHPSVLKSLPVLVFQPENFKEGLECAVCLSEIIEGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGFESSKTSEENDFSGNTETSSSSSIEENSGAMNGLQSSIFPTNVLVWGNHTQVSSSGVSLEEEEGSSQQPTSPPSSTPLASSSDGGNVNGRCHGMLVIDIPSECTSSSLSPSGSRCVEDEVKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEQAQS | 317 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian9g00436 | 317 | CDD | RING-H2_EL5-like | 114 | 157 | - | - | |
Vian9g00436 | 317 | SMART | ring_2 | 115 | 156 | IPR001841 | - | |
Vian9g00436 | 317 | SUPERFAMILY | RING/U-box | 95 | 163 | - | - | |
Vian9g00436 | 317 | FunFam | RING-H2 finger protein ATL3 | 83 | 162 | - | - | |
Vian9g00436 | 317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 161 | IPR013083 | - | |
Vian9g00436 | 317 | MobiDBLite | consensus disorder prediction | 215 | 248 | - | - | |
Vian9g00436 | 317 | MobiDBLite | consensus disorder prediction | 264 | 283 | - | - | |
Vian9g00436 | 317 | Pfam | Ring finger domain | 114 | 157 | IPR001841 | - | |
Vian9g00436 | 317 | MobiDBLite | consensus disorder prediction | 215 | 252 | - | - | |
Vian9g00436 | 317 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 22 | 207 | - | - | |
Vian9g00436 | 317 | MobiDBLite | consensus disorder prediction | 164 | 193 | - | - | |
Vian9g00436 | 317 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 157 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian9g00436 | Vian-Chr9 | 4305534 | 4306487 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian9g00436 | 21 | 300 | C3H Transcription Factor Family | AT1G53820 | 42.140 | 1.16e-62 | 199 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian9g00436 | - | - | gmx:100775523 | 427.172 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian9g00436 | 9 | 4305534 | 4306487 | Vian9g00436 | 9 | 4305534 | 4306487 | ECH |