Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00432 ATGACTAACCCAAAACTTCCCTACACCGGAATCTCAGATTCCGGTAACCACACTTCTCTCTCTAAAAAATCTTTCTACAAGAAGAAGCTTTTCCTCACTCTTTTCGCCACCCTCCTGGTGGCAGCCTCCGTAGCGGCCATTGTCGCTGGAGTGAAAAACAAAAATCAAAAGTCCGACGGTAGCAGCAGCAGCTCTCTGTCCCTCTCCCACCAGTCCCACGCGATTCTTAAGAGCGCGTGTAGTTCTACATTCTACCCAGAACTCTGCTTCTCTGCTGTGGCTTCAGAACCCAACGTCACTCACAAAGTAACCTCTCACCGTGACGTCATTAAACTCTCCCTCGACATCACCACGCGCGCCGTGGAGCACAACTACTTCACCGTGAAGAAGCTCACCACCAAGCACGGCCTAACGAAGCGCGAGAAAACCGCGCTCCACGATTGTCTCGAAACCATTGACGAGACCCTCGACGAGCTGAAAGAGGCTAAGCGCGATCTCGAGCTCTACCCCAACAAGAAAACACTGTACCAGCACGCCGACGATCTGAAAACCTTAATCAGCGCCGCCATCACCAACCAGGTCACGTGCCTCGACGGCTTCTCGCACGAGGACGCCGATAAGCGCATCCGGAAGGCTCTGGAAAAAGGCCAGGTGCACGTGGAACACATGTGCAGCAACGCACTGGCCATGACCAAGAACATGACCGACACCGACATTGCCAACTTCGAACAGAGCACGAAGCTCCGAGACAACAACGTTGGCCAAAATAGAAAGCTCTTGGCCGAGGAGAGCAATGCTGGTGTTGTCTGGCCGGAGTGGATTTCTGCTACCGACAGGAGGCTGCTTCAGGCAACGACAGTGAAGGCCGATGTGGTGGTGGCTGCGGACGGCAGTGGGAACTTTAAGACGGTGTCGGAGGCAGTGGACGCGGCTCCGTTGAAGAGTAGTAAAAGATTTGTTATAAGGATAAAGGCTGGAGTTTACAAAGAAAATGTAGAAGTTCCAAAGAAGAAGACCAACATCATGTTCTTGGGTGATGGAAGAACCACCACCATCATCACCGCCAGCAGAAACGTCGTCGACGGTAGCACCACCTTCCACTCTGCCACCGTCGCTGTGGTGGGTGAAAATTTCCTAGCTAGGGACATAACATTCCAAAACACAGCAGGACCCTCAAAGCACCAAGCAGTGGCTCTAAGAGTAGGAGGGGACCTATCAGCATTTTACAACTGTGACATCTTAGCATACCAAGACACTCTCTATGTCCACAACAACCGTCAATTCTTTGTCAAGTGTCTCATTGCAGGGACAGTGGATTTCATCTTTGGTAACTCTGCAGTGGTGTTTCAAGACTGTGACATCCATGCCAGGCGTCCGGACTCGGGTCAGAAGAACATGGTGACGGCCCAAGGAAGGGTAGACCCTAACCAAAACACTGGCATTGTGATCCAGAAGTGTAGGATTGGTGCAACTTCAGATTTGGAGTCTGTGAAGAAGAGTTTCAAGACCTATCTTGGGAGACCATGGAAGGAGTATTCAAGAACTGTGATCATGCAGAGTAGTATCAGTGATGTGATTGACCCTGTTGGGTGGCATGAGTGGAGTGGCAACTTTGCATTGAGCACTTTGGTCTATAGGGAATATCAGAACACTGGGCCTGGTGCTGGAACCTCCAATAGGGTCTCTTGGAAAGGGTTCGAAGTTATAACTGATGCTGCTGAAGCCCGGGCTTTTACCCCTGGAAGCTTCATTGGAGGCTCTAGCTGGTTGGACTCTACGGGCTTTCCTTTCTCTCTTGGCTTGTAA 1806 0.5105 MTNPKLPYTGISDSGNHTSLSKKSFYKKKLFLTLFATLLVAASVAAIVAGVKNKNQKSDGSSSSSLSLSHQSHAILKSACSSTFYPELCFSAVASEPNVTHKVTSHRDVIKLSLDITTRAVEHNYFTVKKLTTKHGLTKREKTALHDCLETIDETLDELKEAKRDLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHEDADKRIRKALEKGQVHVEHMCSNALAMTKNMTDTDIANFEQSTKLRDNNVGQNRKLLAEESNAGVVWPEWISATDRRLLQATTVKADVVVAADGSGNFKTVSEAVDAAPLKSSKRFVIRIKAGVYKENVEVPKKKTNIMFLGDGRTTTIITASRNVVDGSTTFHSATVAVVGENFLARDITFQNTAGPSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVKCLIAGTVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATSDLESVKKSFKTYLGRPWKEYSRTVIMQSSISDVIDPVGWHEWSGNFALSTLVYREYQNTGPGAGTSNRVSWKGFEVITDAAEARAFTPGSFIGGSSWLDSTGFPFSLGL 601
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00432 601 Pfam Pectinesterase 290 586 IPR000070 GO:0030599|GO:0042545
Vian9g00432 601 Pfam Plant invertase/pectin methylesterase inhibitor 76 230 IPR006501 GO:0004857
Vian9g00432 601 CDD PMEI-like_3 78 235 - -
Vian9g00432 601 SUPERFAMILY Pectin lyase-like 285 600 IPR011050 -
Vian9g00432 601 PANTHER PECTINESTERASE 43 591 - -
Vian9g00432 601 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 235 IPR035513 -
Vian9g00432 601 ProSitePatterns Pectinesterase signature 1. 315 334 IPR018040 -
Vian9g00432 601 SMART PMEI_2 71 230 IPR006501 GO:0004857
Vian9g00432 601 FunFam Pectinesterase 72 235 - -
Vian9g00432 601 NCBIfam pectinesterase inhibitor domain 65 234 IPR006501 GO:0004857
Vian9g00432 601 Coils Coil 145 169 - -
Vian9g00432 601 FunFam Pectinesterase 284 601 - -
Vian9g00432 601 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 235 IPR035513 -
Vian9g00432 601 Gene3D - 284 601 IPR012334 -
Vian9g00432 601 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian9g00432 Vian-Chr9 4250604 4255190 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00432 20 601 Carbohydrate Esterase AT3G14310 71.405 0.0 839
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00432 K01051 - pvu:PHAVU_010G123100g 1052.35