Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00430 ATGGATACAATTAAGTCATTCAAGGGCTACGGCAAAGTTGACGAGCTGGAACAGCAAGCCTATCAGAAGAAGACACGTAAGCGAATCATAATCATCACAGTGTCTTCCATCGTTCTAATTGCGGTCATCATCGCTGCGGTTGCAGGGGTCGTCATACACAACCGCAACAACAAATCGTCGCCCTCATCTGACTCGGCCCAGCAAACTCAGTTGTCTCCGGCCGCGTCACTCAAAGCGGTGTGCAAGGCTACTCGCTACCCTGACTCCTGCTTCTCCTCCATATCCTCGTTGCCGGAATCCAACACAACCGACCCGGAGCTCCTCTTCAAGCTCTCGCTACGCGTCGCCATTGACGAGCTCTACAAGCTCTCCAGCTTCCCTTCCAAGCTCCGTGCCAATGCGGAGCACGACGCGCGTCTGCAGAAGGCAATCGACGTCTGCAGTTCCGTCATCGGTGACGCGTTGGACCGCCTCAACGACTCGATCTCCGCGCTCGGAACCGTCACCGGAAGGATTGTTTCTTCGGCGAGCGTCAACGACGTGGAGACTGAACAGTTCAAGACGATCGGCGAGGCGCTGAAGTTGGTGAAGAAGAAGAGCGAGAAGAGATTCTCGGTGTACGTGAAGGAAGGGAGCTACGTGGAGAACATCGATTTGGATAAGAACACGTGGAATGTGATGATCTATGGTGATGGGAAGGACAAAACCGTCATCGTCGGTAGCCGGAACTTCATAGACGGAACGCCGACTTTCGAAACTGCAACTTTCGAATATCAGAATAATGGGCCAGGAGCTGACGTGTCCAAGAGGGTCAAATGGGCCGGTTATAAGCCCACTCTCACGGACACCGATGCAGATAGGTTCACTGTGGAGTCCTTTATCCAAGGCCCTGATTGGTTGCCAAATGCAGCTGTGCAGTTTGATTCCACCTTGTGA 936 0.5321 MDTIKSFKGYGKVDELEQQAYQKKTRKRIIIITVSSIVLIAVIIAAVAGVVIHNRNNKSSPSSDSAQQTQLSPAASLKAVCKATRYPDSCFSSISSLPESNTTDPELLFKLSLRVAIDELYKLSSFPSKLRANAEHDARLQKAIDVCSSVIGDALDRLNDSISALGTVTGRIVSSASVNDVETEQFKTIGEALKLVKKKSEKRFSVYVKEGSYVENIDLDKNTWNVMIYGDGKDKTVIVGSRNFIDGTPTFETATFEYQNNGPGADVSKRVKWAGYKPTLTDTDADRFTVESFIQGPDWLPNAAVQFDSTL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00430 311 SMART PMEI_2 72 221 IPR006501 GO:0004857
Vian9g00430 311 Pfam Plant invertase/pectin methylesterase inhibitor 77 183 IPR006501 GO:0004857
Vian9g00430 311 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 189 IPR035513 -
Vian9g00430 311 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 183 IPR035513 -
Vian9g00430 311 Gene3D - 190 256 IPR012334 -
Vian9g00430 311 CDD PMEI-like_3 79 183 - -
Vian9g00430 311 Pfam Pectinesterase 257 296 IPR000070 GO:0030599|GO:0042545
Vian9g00430 311 Pfam Pectinesterase 178 256 IPR000070 GO:0030599|GO:0042545
Vian9g00430 311 NCBIfam pectinesterase inhibitor domain 63 184 IPR006501 GO:0004857
Vian9g00430 311 ProSitePatterns Pectinesterase signature 1. 200 219 IPR018040 -
Vian9g00430 311 SUPERFAMILY Pectin lyase-like 257 309 IPR011050 -
Vian9g00430 311 SUPERFAMILY Pectin lyase-like 178 260 IPR011050 -
Vian9g00430 311 Gene3D - 257 311 IPR012334 -
Vian9g00430 311 PANTHER PECTINESTERASE 179 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00430 Vian-Chr9 4232165 4234714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00430 257 305 Carbohydrate Esterase AT1G53840 55.102 4.37e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00430 - - pvu:PHAVU_010G123100g 269.24