Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00423 ATGTTTCCTTTCCATCCGCATGGAGTTCCGAAACACGCATGCACTCTTCTTGCTGTAACCTGTGGGGCTAGTTTTTCTGAACACATGTCCTCACAGAATCAACACAAATATCCTTTCCCCGAGCTAGTTTCAGCAGGGCGTCTTGAGGTTCAAACGCTTCGGAATCCAGATAAGGATCAGTTTAGGAAAGTGCTGGAGTCGTACCAACCGAATTTTGTTTATTTGCAAGGAGAGCAGCTAGAGGATGGCAGAGTTGGTTCACTGGTTTGGCAAGGATTGGAGTTATCGACCTCTGAAGATATCACAGAACTCTTTGGTTCCACATTGCCTACGGCTGTTTATTTAGAAATACCAAATGGTGAAAGTTTTGCAGAATCTCTTCATCTTAAGGGAGTCCCATATGTTATATTTTGGAAGACTGCCCTTTCTTCTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTTGTACAGAGTTCGTCTACACATACGTGGGATGCTTTTCATCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCAAAACAACCAAGTACTTTTGACTGACAGTCATGGTGCTCTTAGTGAGATGGGGCCATACCTTCTTGGTGACTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGATGAGGAAGATGATGACGAAACTTCCCCAGGCACTCTGCCTGCCATAAAGATACATGAAGATGAATTGAACTTGAGGTTTCTTATTTGTGGTGCACCTTCAACTGTTGACGAGACATTGCTGAGATCTTTGGAGAATGGACTCAGAGCTCTCTTAACTATTGAAATCCGAGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCACTTTTTCTCGGGGAGTTGTGACCATGCGATGTGATATATCAACTTGTAGTTCTGCACATATTTCACTTCTGGTATCTGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGAGTCACATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCATGCACAACTCAACAATGAAGGAAACAAACAGAATATTTCTGAACCTCGCAGATCTGCTTCTATTGCCTGTGGAGCACCTGTATATGAAATTTGCATGAGGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCGTATCGAAGTTTAGTTGCACTCGGTATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTCGAGAAAGATGATGCTGAGCGTCTACTTTTCTTTTATCAAAATTGTGAGAAAGATAGTGGTACAAGCAAAAATAATATAATATTTAGCAGTCCTCCTGGTTGGTTGAAACCACCCCCTCCTAGAAGAAAAAGGTGTGAACCAAGCCAAGGGGCTAGCCCTGGTGTTCATGACGGTGTCTTTGCAGGGCACGGTACTGTTTGTAAAGTAAATGAAGAGGAAAAGGATAGAAAAATGGCGAATGGCATTAGCACCCCATTAACTCCTGCTAGACAGAGATTAAAAGTATCTGCAATGAGGCCAATCCCTCACATTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACAGACGGTTTTAATGGTGCCCAAGTTGAGGCTAATTTGCCACTTGTTGCCCCAGCAAAGCGGAGTACTGGGTCAACATCTGCAACACACAGAAAATCATTTTCAAGTGCAGCTCAATCTAAGCAGGTTATTTCATTGAACCCATTGCCTCTTAAGAAGCATGGTTGCGGTAGAGGCCCAGTTCAGACGTGCTCTGAGGAGGAATTTCTTAAAGACGTCATGGAGTTTCTAATTCTCCGGGGACATAATCGCCTAATTCCTCAAGGAGGGCTTATTGAGTTTCCTGATGCCATACTCAATGGAAAACGTCTTGATCTCTACAATTTGTATAAAGAGGTGGTTACGAGAGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGGCAAATCTTTTCAAAGATGCGGAATTACACAACTACCAATAGGATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCGCATGACGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGCGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTAGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATACATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGGTAATGGGTATTCTCAAGGGTCAATGCCTTCACGACTCCTTTGA 2346 0.4327 MFPFHPHGVPKHACTLLAVTCGASFSEHMSSQNQHKYPFPELVSAGRLEVQTLRNPDKDQFRKVLESYQPNFVYLQGEQLEDGRVGSLVWQGLELSTSEDITELFGSTLPTAVYLEIPNGESFAESLHLKGVPYVIFWKTALSSYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLLTDSHGALSEMGPYLLGDCLKINVDPPEIDEEDDDETSPGTLPAIKIHEDELNLRFLICGAPSTVDETLLRSLENGLRALLTIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNNEGNKQNISEPRRSASIACGAPVYEICMRLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQNCEKDSGTSKNNIIFSSPPGWLKPPPPRRKRCEPSQGASPGVHDGVFAGHGTVCKVNEEEKDRKMANGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFNGAQVEANLPLVAPAKRSTGSTSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLIEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVGNGYSQGSMPSRLL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00423 781 MobiDBLite consensus disorder prediction 552 572 - -
Vian9g00423 781 CDD PHD_ARID4_like 705 756 - -
Vian9g00423 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 762 IPR013083 -
Vian9g00423 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Vian9g00423 781 MobiDBLite consensus disorder prediction 437 472 - -
Vian9g00423 781 CDD ARID 597 695 - -
Vian9g00423 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Vian9g00423 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Vian9g00423 781 SMART ARID_2 592 695 - -
Vian9g00423 781 Gene3D - 593 698 IPR036431 GO:0003677
Vian9g00423 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 776 IPR042293 -
Vian9g00423 781 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00423 Vian-Chr9 4160364 4167767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00423 4 770 ARID Transcription Factor Family AT3G43240 59.561 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian9g00423 ARID 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00423 - - gmx:100816540 1423.68