Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00421 ATGGCTCCTTATTCTACAACAAACAATGGAAGAACATCAAATCAAAGAAAGAGAAAGATTGAGATCAAAGAAGTTGAACAGAAAAACAGACGACGCGTCACCTTCTCAAAACGAAAATTAGGACTTTTTAACAAGCTCACTGAACTTTCTCTTCTATGCAAAGCACAAACTGCTTTGATCATCACCTCTGAAAATGGCAACGTGTATTCCTGTGGTTACCCTAATACCGACGCCGTTCTCTATCGCTACGTCAGCGGAGGGTTTACCGAACTCTGCAGAGTTACACAAGACCAGCAAGAATATAACGAAAAGCAAAGGCTTGAATATGAGAATGTGCACAGGAACTTGAAAGAAAAGCATAAGCAATTGGAAGAATTGAAAGAAGCACAAAAGAGTCGTTCTTGTTTTGATTCTTGGTGGAATCTCTCCCATCAAAACATGTCTTTGGAAGATCTTGAAGAGTTTAAGACCTCTTTGGAAACTTTCAAGTTTAATCTCATCACACTGTTGCAAGAGAAAGAAACAAGTCTTCCATTAAGTATGGCATCAAGAAACTCCCAAAGCGTTCTTTAA 573 0.3874 MAPYSTTNNGRTSNQRKRKIEIKEVEQKNRRRVTFSKRKLGLFNKLTELSLLCKAQTALIITSENGNVYSCGYPNTDAVLYRYVSGGFTELCRVTQDQQEYNEKQRLEYENVHRNLKEKHKQLEELKEAQKSRSCFDSWWNLSHQNMSLEDLEEFKTSLETFKFNLITLLQEKETSLPLSMASRNSQSVL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00421 190 Gene3D - 27 103 IPR036879 GO:0003677|GO:0046983
Vian9g00421 190 PANTHER MADS BOX PROTEIN 17 166 - -
Vian9g00421 190 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Vian9g00421 190 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Vian9g00421 190 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Vian9g00421 190 Coils Coil 102 133 - -
Vian9g00421 190 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Vian9g00421 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
Vian9g00421 190 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Vian9g00421 190 SUPERFAMILY SRF-like 17 104 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00421 Vian-Chr9 4138121 4138693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00421 17 168 Type I MADS-box Gene Family AT2G24840 31.210 1.93e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian9g00421 SRF-TF 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00421 - - gsj:114418701 190.66