Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00419 ATGGAGGGAACTTCATACGCATCTTCATCTGGGAATGTTTCCTCCACTGCTGAAGATCCTTTGGTTGACGATTTCTACTTTTCAGCACTTCACGATGCTGAAGAAATATTTCCAATTTCGGATGAGAAATATGCCGAAGAGTTACAACTCCAGGAAGCCCTCCATTCCTCCGCAATGTCAAGCGCTAGGGCTGAAAAAGAAGTTGTTATAGTGGACGAAGATGATGACGGCGACCACCATTTGAGAAAGCTTAAGGGGAAACAGAAAGATATCGGTGAATCTTCCCATGGCTACTGTGGTATTTGCATGGATGCGAAATCTGGAGAAGAAATGTTCAAGAACCAAAACTGTTCTCACCTTTATTGTGTAGATTGCATTGGAGGACATGTTGCTGCAAAGATTCAGGAAAATATATCAATGGTGAAATGTCCTGAGCCAAAATGCAAAGAGGTTATAGAGCCTGAGAACTGTCGTTCGATTATCCCCAAAGAAGTGTTTGATAGATGGGAAAATGCTCTTTGTGAGAATGTAGTGCTTGAATCGCAAAAGTTTTACTGTCCTTTCAAGGACTGTTCAGCTATGATGATATGTGATGAAGGGGAAATAGTAACTATTTCTGAGTGTCCACATTGTAACAGATTGTTTTGTGCACAGTGTAAGGTTTCATGGCATGCAGGAATAGATTGCAGTGAATTCAACGCCTTGGAGCATGATGAGAGAGGGAGGGAAGATCTGCTGGTGCTGGATCTTGCCAAGAACAAAAGCTGGAGAAGATGTCCAAAATGCAGATTCTATGTGGAAAAAAATGAAGGATGTTCTCATATTTCTTGCAGATGTGGTAAGGAATTTTGTTATGCTTGTGGATCCTCTTGGTCACAGCACCATGCATGTTAA 894 0.4161 MEGTSYASSSGNVSSTAEDPLVDDFYFSALHDAEEIFPISDEKYAEELQLQEALHSSAMSSARAEKEVVIVDEDDDGDHHLRKLKGKQKDIGESSHGYCGICMDAKSGEEMFKNQNCSHLYCVDCIGGHVAAKIQENISMVKCPEPKCKEVIEPENCRSIIPKEVFDRWENALCENVVLESQKFYCPFKDCSAMMICDEGEIVTISECPHCNRLFCAQCKVSWHAGIDCSEFNALEHDERGREDLLVLDLAKNKSWRRCPKCRFYVEKNEGCSHISCRCGKEFCYACGSSWSQHHAC 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00419 297 SMART ibrneu5 167 229 IPR002867 GO:0008270
Vian9g00419 297 SMART ibrneu5 239 297 IPR002867 GO:0008270
Vian9g00419 297 SUPERFAMILY RING/U-box 94 176 - -
Vian9g00419 297 CDD Rcat_RBR_unk 256 291 - -
Vian9g00419 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 180 IPR013083 -
Vian9g00419 297 Gene3D - 227 297 - -
Vian9g00419 297 SUPERFAMILY RING/U-box 175 232 - -
Vian9g00419 297 ProSiteProfiles TRIAD supradomain profile. 95 297 IPR044066 -
Vian9g00419 297 ProSitePatterns Zinc finger RING-type signature. 117 126 IPR017907 -
Vian9g00419 297 Pfam IBR domain, a half RING-finger domain 250 297 IPR002867 GO:0008270
Vian9g00419 297 Pfam IBR domain, a half RING-finger domain 168 229 IPR002867 GO:0008270
Vian9g00419 297 CDD BRcat_RBR_unk 180 232 - -
Vian9g00419 297 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 291 IPR031127 GO:0004842|GO:0016567
Vian9g00419 297 FunFam RBR-type E3 ubiquitin transferase 94 180 - -
Vian9g00419 297 SUPERFAMILY RING/U-box 240 296 - -
Vian9g00419 297 ProSiteProfiles Zinc finger RING-type profile. 99 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00419 Vian-Chr9 4125897 4126936 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00419 99 297 C3H Transcription Factor Family AT2G31760 29.665 3.32e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00419 K11975 - gmx:100815626 421.009