Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00418 ATGATTATCAGTTCACCTTTTGCATTTGCATTTCATCTACTTCTCTTTCAACAGATCCCTTATACAAACTTTATATTTCCCAAGTGGAAACATAAAGAAATATCAAGTGGTAGGGTTGAAAAGAAAGCTGTTCAAGTAGATGTAAAGAATGTCGGTTACTTATCTTTAAGAAACAACCCCAAGTTGAAACATAAAGAGATGTCAAGTGGTAGGGTTGAAAAGAAAGCTGTTCAAGTGGATGTAAAGAATGTCGGTTACTTATCTTTGAGAAACCCCATTTTGAAACATAAAGAGATGTCAAGTGGTATGGTTGAAAAGAAAGCTCTTCAAATGGATGCAAAGAACGTCGGTAACTTATCTTTGAGAAACCCCAAGTTAAAACATAAAGAGGTGTCAAGTGGTAGGGTTGAAAACAAAGTTGTTCAAGTGGATGTAATGAATGTCGGTTATTTATCTTTGAGAAACCCCAAGTTGAAACATAAAGAGATGTCAAGTGGTAGGGTTGAAAAGAAAGTTGTTCAAGTGGATGTAAAGAATGTCGATCACTTATCTTTGAGAAACCCTAAGTTGATACATAAAGAGATGTCAAGTGGTAGGGTTGAAAAGAAAGCTCTTCAAGTGGATGTAAAGAATGTCGGTGATCTATCTTTGAGAAATCCCAAGTTGAAACCTAAAGAGGTGTCAAGTGGTAGTGTTGAAAAGAAAGTTGCTCAAGTGGATTTAAAGAATGTCGGTTACTTAACTTTGAGAAATCCCAAGTTGAAACATATAGAGATGTCAAGTGGTAGAGTTGAAAAGAAAGTTGTTCAAGTGGATGTAAAGAATGTCGGTAACTTATCTTTGAGAAACCCCAAGTTGAAACATAAAGAGGTGTCAAATGGTAGGGTTGAAAAAAAAGTTGTTCAAATAGATGTAAAAAATGTGGGTTACTTATCTTTGAAAAATCCCAAGTTGAAACATAAAGAGATGTCAAGTGGTACGGTTGAAAAGAAAGGTTTTCAAGTGGATGTAAAGAATGTTGGTTACTTATCTTTGAAAAACCCCAAATTGGAACATAAAGAGGTGTCAAGTGATGTGGCCATGAATTTTGCTATGTGGATTGTCTTGGAGTGGTACACATTATTCATGAAATTTTCGATAAATATTATGCGCATGGTGGTACGGGGCTGCGGTGATAGCGACGATCGAGTGATCCCTTATACAAACTTTATATTTCCCAAGTGGAAACATAAAGAAATATCAAGTGGTAGGGTTGAAAAGAAAGCTGTTCAAGTAGATGTAAAGAATGTCGGTTACTTATCTTTAAGAAACAACCCCAAGTTGAAACATAAAGAGATGTCAAGTGGTAGGGTTGAAAAGAAAGCTGTTCAAGTGGATGTAAAGAATGTCGGTTACTTATCTTTGAGAAACCCCATTTTGAAACATAAAGAGATGTCAAGTGGTATGGTTGAAAAGAAAGCTCTTCAAATGGATGCAAAGAACGTCGGTAACTTATCTTTGAGAAACCCCAAGTTAAAACATAAAGAGGTGTCAAGTGGTAGGGTTGAAAACAAAGTTGTTCAAGTGGATGTAATGAATGTCGGTTATTTATCTTTGAGAAACCCCAAGTTGAAACATAAAGAGATGTCAAGTGGTAGGGTTGAAAAGAAAGTTGTTCAAGTGGATGTAAAGAATGTCGATCACTTATCTTTGAGAAACCCTAAGTTGATACATAAAGAGATGTCAAGTGGTAGGGTTGAAAAGAAAGCTCTTCAAGTGGATGTAAAGAATGTCGGTGATCTATCTTTGAGAAATCCCAAGTTGAAACCTAAAGAGGTGTCAAGTGGTAGTGTTGAAAAGAAAGTTGCTCAAGTGGATTTAAAGAATGTCGGTTACTTAACTTTGAGAAATCCCAAGTTGAAACATATAGAGATGTCAAGTGGTAGAGTTGAAAAGAAAGTTGTTCAAGTGGATGTAAAGAATGTCGGTAACTTATCTTTGAGAAACCCCAAGTTGAAACATAAAGAGGTGTCAAATGGTAGGGTTGAAAAAAAAGTTGTTCAAATAGATGTAAAAAATGTGGGTTACTTATCTTTGAAAAATCCCAAGTTGAAACATAAAGAGATGTCAAGTGGTACGGTTGAAAAGAAAGGTTTTCAAGTGGATGTAAAGAATGTTGGTTACTTATCTTTGAAAAACCCCAAATTGGAACATAAAGAGGTGTCAAGTGATGTGGCCATGAATTTTGCTATGTGGATTGTCTTGGAGTGGTACACATTATTCATGAGTAAGTTTTGCACTCTAACAGAAACCCCTAGTGCCGCCGCAGCAGCTCACGTCCCCAACCCCAAGAACCAGGGTTTCTTCCCGAGGGAATTAAACTTCTCCAACTCCTTAAAGCCCGAATCCGGTGAAATTATGAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTTCCCGCTGTAGCAGCTGAGGAGACCAACAAGAAGAGAAGGTCTCCTGTTTCTCGCAGCAACATTGACGATGGAATGCTGTCCTTCACCTCCGGCGTCATTCTACCGACTTTGAATGTAAAAGCTCGTGGTGTTGCTGGGGGCGGTGATTCCGAAAACTCGGATCTCGAGGTTTCCTTGGTGAAAGAGGCGGACAGCAGGGTGGTGGAACCGGAGAAAAGGCCCCGGAAGAGGGGTCGAAAGCCGGCGAATGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAATCTGAATCAAAGGTTCTACGCGCTTCGTGCGGTGGTTCCAAACGTGTCGAAGATGGACAAGGCGTCGCTGTTGGGCGATGCCATATCCTACATAAACGAGCTGAAGTCAAAGCTGAGTGAGCTTGAATCGGAGAAAGGGGAATTGGAGAAGCAATTGGATTCGGCGAAGAAGGAGCTTGAGCTGTCAACCAAAAATCCCTCGTTGCCTGCCACGTATATATTTTTATAA 2976 0.3948 MIISSPFAFAFHLLLFQQIPYTNFIFPKWKHKEISSGRVEKKAVQVDVKNVGYLSLRNNPKLKHKEMSSGRVEKKAVQVDVKNVGYLSLRNPILKHKEMSSGMVEKKALQMDAKNVGNLSLRNPKLKHKEVSSGRVENKVVQVDVMNVGYLSLRNPKLKHKEMSSGRVEKKVVQVDVKNVDHLSLRNPKLIHKEMSSGRVEKKALQVDVKNVGDLSLRNPKLKPKEVSSGSVEKKVAQVDLKNVGYLTLRNPKLKHIEMSSGRVEKKVVQVDVKNVGNLSLRNPKLKHKEVSNGRVEKKVVQIDVKNVGYLSLKNPKLKHKEMSSGTVEKKGFQVDVKNVGYLSLKNPKLEHKEVSSDVAMNFAMWIVLEWYTLFMKFSINIMRMVVRGCGDSDDRVIPYTNFIFPKWKHKEISSGRVEKKAVQVDVKNVGYLSLRNNPKLKHKEMSSGRVEKKAVQVDVKNVGYLSLRNPILKHKEMSSGMVEKKALQMDAKNVGNLSLRNPKLKHKEVSSGRVENKVVQVDVMNVGYLSLRNPKLKHKEMSSGRVEKKVVQVDVKNVDHLSLRNPKLIHKEMSSGRVEKKALQVDVKNVGDLSLRNPKLKPKEVSSGSVEKKVAQVDLKNVGYLTLRNPKLKHIEMSSGRVEKKVVQVDVKNVGNLSLRNPKLKHKEVSNGRVEKKVVQIDVKNVGYLSLKNPKLKHKEMSSGTVEKKGFQVDVKNVGYLSLKNPKLEHKEVSSDVAMNFAMWIVLEWYTLFMSKFCTLTETPSAAAAAHVPNPKNQGFFPRELNFSNSLKPESGEIMSFGESKKSSYNGSYFPAVAAEETNKKRRSPVSRSNIDDGMLSFTSGVILPTLNVKARGVAGGGDSENSDLEVSLVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRRENLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLSELESEKGELEKQLDSAKKELELSTKNPSLPATYIFL 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00418 991 Coils Coil 940 981 - -
Vian9g00418 991 MobiDBLite consensus disorder prediction 876 912 - -
Vian9g00418 991 FunFam Transcription factor bHLH13 894 968 - -
Vian9g00418 991 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 904 969 IPR036638 GO:0046983
Vian9g00418 991 PANTHER MYC 865 967 IPR045084 GO:0003700|GO:0006355
Vian9g00418 991 Pfam Helix-loop-helix DNA-binding domain 905 950 IPR011598 GO:0046983
Vian9g00418 991 Gene3D - 893 980 IPR036638 GO:0046983
Vian9g00418 991 SMART finulus 907 956 IPR011598 GO:0046983
Vian9g00418 991 CDD bHLH_AtAIB_like 898 974 - -
Vian9g00418 991 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 901 950 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00418 Vian-Chr9 4104623 4116935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00418 821 974 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 68.590 1.68e-53 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00418 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00418 K13422 - var:108323675 552.747