Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00417 ATGGAGGGAGCTTCATCCTCATCTTCATTTGTGAATTATCCTTCCACTGCTGAAGATCATCACTTGGTCGACGATTTCTACTTTTCAGCACTTTACGATGATGAAGAAATATTTCCAATTTCTGATGAGAAATATGCTGAAGAGCTGCAACTACAAGAAGCACTCTATTCCTCCACGATGTCAAGTGGTATGGTTGAAAAGAAAGCTGTTCAAGTGGATGTAAATGATGTCGGTGACTTATCTTTGACTGTTCAAGTGGATGTAAATTATGTCGGTGACTTATCTTTGAGAAACCTCAAGAGGAAACATAAAGAGATCGGTGAAGCTTCCCTTGCACACTGTGGTATTTGCATGGATGCCAAGCCTGGGAAAGAAATGTTCAGGAACCGAAACTGTTCTCACCTTTATTGTGATTATTGCATTGGAGGACATGTTGCTGCGAAAATTCAGGAAAATATATCAATGGTGAAATGTCCTGAGCCAAAATGTAAAGCGGTTATAGAGCCAGACAACTGTCGTTCAATTATCCCTAAAGAAGTGTTTGATAGATGGGAAAATTCTCTTTGTGAGAATGTGGTGCTTGGATCACAAAAGTTTTACTGTCCCTTTAAGGATTGTTCAGCTATGATGATATGTGAAGCAGGGGAAGTTGTGACTTCATCGGAGTGTCCACATTGCAATAGACTGTTTTGTGCACAGTGCAAGGTTTCGTGGCATGCAGGAATAAACTGTGAGGAGTTTCAGATGTCGAAAAGAGAGAAAGGAGAGAACGGAGACTCATTGGTGATTGAACTTGCAAAGACTAAACGTTGGAGAAGATGTTCAAAATGCAAAATTTACGTAGAAAGAATTGATGGATGTACACGTATTTCATGCAGATGTGGCCATGAATTTTGCTATGCTTGTGGATTGTCTTGGAGTGGTACACATTATTCATGTGTAGGTCGTTAG 951 0.4006 MEGASSSSSFVNYPSTAEDHHLVDDFYFSALYDDEEIFPISDEKYAEELQLQEALYSSTMSSGMVEKKAVQVDVNDVGDLSLTVQVDVNYVGDLSLRNLKRKHKEIGEASLAHCGICMDAKPGKEMFRNRNCSHLYCDYCIGGHVAAKIQENISMVKCPEPKCKAVIEPDNCRSIIPKEVFDRWENSLCENVVLGSQKFYCPFKDCSAMMICEAGEVVTSSECPHCNRLFCAQCKVSWHAGINCEEFQMSKREKGENGDSLVIELAKTKRWRRCSKCKIYVERIDGCTRISCRCGHEFCYACGLSWSGTHYSCVGR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00417 316 ProSiteProfiles TRIAD supradomain profile. 110 316 IPR044066 -
Vian9g00417 316 ProSiteProfiles Zinc finger RING-type profile. 114 162 IPR001841 -
Vian9g00417 316 ProSitePatterns Zinc finger RING-type signature. 132 141 IPR017907 -
Vian9g00417 316 CDD Rcat_RBR_unk 270 306 - -
Vian9g00417 316 SMART ibrneu5 182 244 IPR002867 GO:0008270
Vian9g00417 316 SMART ibrneu5 259 313 IPR002867 GO:0008270
Vian9g00417 316 SUPERFAMILY RING/U-box 260 312 - -
Vian9g00417 316 SUPERFAMILY RING/U-box 110 191 - -
Vian9g00417 316 CDD BRcat_RBR_unk 195 247 - -
Vian9g00417 316 Pfam IBR domain, a half RING-finger domain 265 313 IPR002867 GO:0008270
Vian9g00417 316 Pfam IBR domain, a half RING-finger domain 186 244 IPR002867 GO:0008270
Vian9g00417 316 SUPERFAMILY RING/U-box 192 249 - -
Vian9g00417 316 Gene3D - 242 315 - -
Vian9g00417 316 FunFam RBR-type E3 ubiquitin transferase 109 195 - -
Vian9g00417 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 194 IPR013083 -
Vian9g00417 316 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 306 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00417 Vian-Chr9 4093106 4094440 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00417 107 303 C3H Transcription Factor Family AT2G19610 28.365 1.61e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00417 K11975 - gmx:100815626 397.127