Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00415 ATGGACGAAACTTCATCTGACTCTTTTCAGTCTTCACACGAGTCTGCTTCCTATTCATCTTACTCTTCACACGAGTCTGCTTCCCATTCTCAGTCTTCACACGAGTCTGCTTCTCAGTCTTCCGACGAGTATGTTTCCTCTTCATCAGATGGTCTGGAATTTGAACCAAAGAATGCATTGCCAACATCTGATAGAAAAAATGTTAAGCGGAAATTGTCGAGTTCCTCATCGGAAAGCGATGGAGGAGGGTCAAGTAGAAGACTGAACAAAGTGGAAGATGCAGACGGCGATGATGATGGCCCTGTGAGATACCGCAGAGGGAAACAGGTAAAGATAGAAGAATCTTTGTGTGTGTGTGGTATTTGCATGGATGCCATACCTGATGAAAAGAAGTTCAGGATCCAAAACTGTTCTCACATCTTTTGCAATGGCTGCATCACAAGACATGTTGCTGCAAAGATTGAGGAGAATAGATCAGTGGTGCAATGCCCAAACCCTAATTGCAAGGAGGGTATAGAGCTTGAGCATTGTGGTTCGATTATCCCTAAAGAAGTGTTTGATAAATGGGGAGATATTCTTTGTGAGAATCTAGTGGTTGAAGCAGAAAAGTTTTTCTGTCCTTTTAAGGACTGTTCAGCTCTGTTGATGCGTGATGGTGAAGAAGTTGTGACTTCATCAGAGTGTCCACATTGCCACAGACTGTGCTGCGCACAGTGCAGGGTTTCGTGGCATGCAGGAATGGACTGTGAGGAGTTTCAGAGGTCGAAAAGAGAGAAAGGAGAGAATGGAGACTCGATGGTGACGAAGCTTGCAAAGAAGAAAGGTTGGAGAAAATGTCCAAATTGCAGTTTTTATGTAGAAAGAATTGCAGGATGCTCACGTATAACTTGCAGATGTAATCATAAATTTTGCTATGATTGTGGATCGTCTTGGAACAATAATGAGCACTATTCATGCCGATCTAAATAA 969 0.4283 MDETSSDSFQSSHESASYSSYSSHESASHSQSSHESASQSSDEYVSSSSDGLEFEPKNALPTSDRKNVKRKLSSSSSESDGGGSSRRLNKVEDADGDDDGPVRYRRGKQVKIEESLCVCGICMDAIPDEKKFRIQNCSHIFCNGCITRHVAAKIEENRSVVQCPNPNCKEGIELEHCGSIIPKEVFDKWGDILCENLVVEAEKFFCPFKDCSALLMRDGEEVVTSSECPHCHRLCCAQCRVSWHAGMDCEEFQRSKREKGENGDSMVTKLAKKKGWRKCPNCSFYVERIAGCSRITCRCNHKFCYDCGSSWNNNEHYSCRSK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00415 322 ProSiteProfiles TRIAD supradomain profile. 115 322 IPR044066 -
Vian9g00415 322 SUPERFAMILY RING/U-box 191 255 - -
Vian9g00415 322 Pfam IBR domain, a half RING-finger domain 269 319 IPR002867 GO:0008270
Vian9g00415 322 Pfam IBR domain, a half RING-finger domain 201 249 IPR002867 GO:0008270
Vian9g00415 322 ProSiteProfiles Zinc finger RING-type profile. 119 164 IPR001841 -
Vian9g00415 322 MobiDBLite consensus disorder prediction 1 105 - -
Vian9g00415 322 Gene3D - 246 322 - -
Vian9g00415 322 SUPERFAMILY RING/U-box 114 196 - -
Vian9g00415 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 201 IPR013083 -
Vian9g00415 322 SMART ibrneu5 187 249 IPR002867 GO:0008270
Vian9g00415 322 SMART ibrneu5 264 319 IPR002867 GO:0008270
Vian9g00415 322 MobiDBLite consensus disorder prediction 1 53 - -
Vian9g00415 322 SUPERFAMILY RING/U-box 265 320 - -
Vian9g00415 322 FunFam RBR-type E3 ubiquitin transferase 114 200 - -
Vian9g00415 322 CDD Rcat_RBR_unk 275 311 - -
Vian9g00415 322 MobiDBLite consensus disorder prediction 59 73 - -
Vian9g00415 322 MobiDBLite consensus disorder prediction 85 105 - -
Vian9g00415 322 CDD BRcat_RBR_unk 200 252 - -
Vian9g00415 322 ProSitePatterns Zinc finger RING-type signature. 137 146 IPR017907 -
Vian9g00415 322 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 318 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00415 Vian-Chr9 4060152 4061271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00415 119 309 C3H Transcription Factor Family AT2G19610 26.733 1.21e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00415 K11975 - gmx:100815626 300.056