Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00408 ATGGCCGCCACAACCAACGCCGCTGCTCCGCCGCGCCAGCTCTCTCCAAAGGAAACCGACATCCAGATGATGTTGGCAGCCGACGTTCACCTCGGCACCAAAAACTGTGATTTTCAAATGGAGCGCTACATCTTCAAGCGCCGCAACGACGGTATTTACATTATCAACCTTGGTAAGACATGGGAGAAGCTTCAACTTGCTGCTAGGGTTATCGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCTCGCCCTTATGGTCAGAGAGCGGTTCTCAAGTTTGCTCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCATACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCTTTTAGCGAGCCTCGCCTCCTTATCCTTACGGATCCCAGAACAGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCACCCATGAGGTATGTGGACATTGGGATTCCTGCCAACAACAAGGGCAAACACAGCATTGGGTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCTGGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACTGACTATAATCCTGGTGCTATTGCTGCTGATGGCCAGTGGCCCGGTACAATTGATCAATCGTGGACAGATGCAGTTCCACAACCTATTCCCGCTGTACCTGGCGTCAACTGGGGAGCACCAGCCTCTACCGATGCACCCGCTGCAGGAGATTGGGGCGAGGCTGTTCCACCACCACAACAAATCCCTCTTCCTCCTTCCGGAGTTGAATCTGTCCAAGCAAGTGGCTGGGATTAA 930 0.5108 MAATTNAAAPPRQLSPKETDIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPASTDAPAAGDWGEAVPPPQQIPLPPSGVESVQASGWD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00408 309 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Vian9g00408 309 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 MobiDBLite consensus disorder prediction 240 309 - -
Vian9g00408 309 Hamap 40S ribosomal protein SA [rps-0]. 8 286 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vian9g00408 309 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 PANTHER 40S RIBOSOMAL PROTEIN SA 11 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vian9g00408 309 FunFam 40S ribosomal protein SA 20 226 - -
Vian9g00408 309 Gene3D - 20 226 - -
Vian9g00408 309 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00408 309 NCBIfam 30S ribosomal protein S2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00408 Vian-Chr9 3950193 3951840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00408 3 281 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.737 4.23e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00408 K02998 - gmx:548014 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00408 9 3950193 3951840 Vian9g00408 9 3950193 3951840 ECH