Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00407 ATGGCCGCCACAACCAACGCCGCTGCCCCGCCGCGCCAGCTCTCTCAAAAGGAAGCCGACATCCAGATGATGTTGGCAGCCGACGTTCACCTCGGCACCAAAAATTGTGATTTTCAAATGGAGCGCTACATCTTCAAGCGCCGCAACGATGGTATTTACATTATCAACCTTGGTAAGACATGGGAGAAGCTTCAACTTGCTGCTAGGGTTATCGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCTCGGCCTTATGGTCAGAGAGCGGTTCTCAAGTTTGCCCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCACACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCTTTTAGCGAGCCTCGCCTCCTTATCCTCACGGATCCAAGAACAGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCACCCATGAGGTATGTGGACATTGGGATTCCTGCCAACAACAAGGGCAAACACAGCATTGGGTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCTGGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCAAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACTGACTATAATCCTGGTGCTATTGCTGCTGATGGCCAGTGGCCCGGTACAATTGATCAATCGTGGACAGATGCAGTTCCACAACCTATTCCAGCTGTACCTGGCGTCAACTGGGGAGCGCCACCCTCTACAGATGCACCTGTTGCAGGAGATTGGGGCGAGGCTGTTCCACCGCCACAACAAATCCCTCTTCCTTCATCCGGAGTCGAATCTGTCCAAGCAAGTGGCTGGGATTAA 930 0.5097 MAATTNAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPPSTDAPVAGDWGEAVPPPQQIPLPSSGVESVQASGWD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00407 309 NCBIfam 30S ribosomal protein S2 16 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vian9g00407 309 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 MobiDBLite consensus disorder prediction 240 309 - -
Vian9g00407 309 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Vian9g00407 309 Hamap 40S ribosomal protein SA [rps-0]. 8 256 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vian9g00407 309 PANTHER 40S RIBOSOMAL PROTEIN SA 11 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vian9g00407 309 Gene3D - 20 226 - -
Vian9g00407 309 FunFam 40S ribosomal protein SA 20 226 - -
Vian9g00407 309 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian9g00407 309 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00407 Vian-Chr9 3941116 3942764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00407 3 267 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 77.612 2.12e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00407 K02998 - gmx:100805318 587.8