Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00398 ATGACCAACTTAAAGATCGGCGGCGAGAAGGATATGGACGATGAGGAAGAGATCCAGTCGCATCCGTCGCCGGCGAGCGGATCCCCGGTGTCTTCTCCGAGGGCGAACGGACGGATAACGGTGACTGTCGCGGCGCCGGCGCCGTCGAATAGTTTGGCATTAGCGCTTCCGATTCAGCAGCCGTCGAAGGGGAACGGTGGTGGAGGAGGCGGCGGAGGAAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTACTGATCGACGCGTGGGGAGAGAGGTATCTGGAACTGAGCAGAGGAAATCTGAAACAGAAGCACTGGAAGGAGGTGGCGGATATCGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACAGATATTCAGTGCAAAAACCGGATCGACACCGTAAAGAAGAAGTACAAATCGGAGAAGGCTAAGATCGCCGCCGGCGCCACCAGCAAGTGGCCGTTCTTCGACCGTTTGGACAAATTAATCGGTCCAAGCGCCAAGATCCCCGGAGCCGGAGCCTCCTCCGGTACCGCCGGCACCAGTGCTGCCGGAAACAGTATTTTACAGTCGCACAAAGTGCCGTTAGGGATTCCGGTCGGCGTTCGCGACGGCGTGAATCAGTATCACCGTCCTCAAAGGCCGGCGCAGCAACAACAACCGCAGCCGGTTCCGTTGAAGAACCAGAAGATTCAGTTCCGGCGCCGCGGTCCACCGTTGGAATCAGATTCGGACGAGCGTGGCGCGTCATCGCCAGCTTCGAGCGACAGTTTTCCCCCGGAGAGTTTCGAGCGGAAGAGGCCGCGGGTGATGAGTTCGAACGCAGGGAAAGGAAGTGAAGGAAGACGGAGGGCGAAGGGTTGGGGAAGCGCGGTGAGGGAACTGACGCAGGCGATTCTGAAATTTGGCGAGGCGTATGAACACGCGGAGAGCTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGGATGCAGTTTTTCATGAAGACACAACTGGAGATTTCGCAACTCAAGCTTGGAAGAAAAGGTGCTAATCCTGGCAACAATCACCATAGCACCACGAACAATAACAATAACAACAATCATAACAACAATAATAGCGACAGCGAGTGA 1158 0.5656 MTNLKIGGEKDMDDEEEIQSHPSPASGSPVSSPRANGRITVTVAAPAPSNSLALALPIQQPSKGNGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFFDRLDKLIGPSAKIPGAGASSGTAGTSAAGNSILQSHKVPLGIPVGVRDGVNQYHRPQRPAQQQQPQPVPLKNQKIQFRRRGPPLESDSDERGASSPASSDSFPPESFERKRPRVMSSNAGKGSEGRRRAKGWGSAVRELTQAILKFGEAYEHAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGANPGNNHHSTTNNNNNNNHNNNNSDSE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00398 385 MobiDBLite consensus disorder prediction 169 293 - -
Vian9g00398 385 MobiDBLite consensus disorder prediction 54 77 - -
Vian9g00398 385 MobiDBLite consensus disorder prediction 214 230 - -
Vian9g00398 385 MobiDBLite consensus disorder prediction 178 192 - -
Vian9g00398 385 MobiDBLite consensus disorder prediction 21 40 - -
Vian9g00398 385 MobiDBLite consensus disorder prediction 353 385 - -
Vian9g00398 385 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 42 354 IPR044823 -
Vian9g00398 385 FunFam trihelix transcription factor ASIL2 78 143 - -
Vian9g00398 385 MobiDBLite consensus disorder prediction 361 385 - -
Vian9g00398 385 Gene3D - 78 143 - -
Vian9g00398 385 MobiDBLite consensus disorder prediction 1 40 - -
Vian9g00398 385 Pfam Myb/SANT-like DNA-binding domain 75 165 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00398 Vian-Chr9 3867769 3880352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00398 12 366 Trihelix Transcription Factor Family AT3G14180 47.926 4.00e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian9g00398 Myb_DNA-bind_4 7.7e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00398 - - gmx:100812599 531.946