Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00387 ATGAATACTTTGAAACATGCAATTAATACTATAATTATCAGAGAAGGATATGATTATAATGGTTTTAATCAGCTATTGACTTGTTCAACAAAATCTGAAATTTTCCAAAGAGGGCCCTCTCATTGTGAGGTTCTCTTTGCACTCTTCCAAAGGAGACCCCCTCACCATGCATGCATGCAGGGGTCAGAAGAAAAAACAAGGGAAAAACGAAAAACTAGCAGAAGCAATGACCCGAAAGAAATCACAATCACATTCCTTGGTTTTGAATACGCCTTGAGCCAAATTTTGAGCAGAGTAATGGCCATAGCTCCGGCAACAATTCTCCGGCCAACTCTCATGATCATCGTCACTTTGCCTGTGATATATTCCATGACAGAAGCTGAAGCTTTGGTAAGTCTCAAAAGCACTTTCACCAATGCTCAACTTTTAAATGGTTGGGTGGCTGGTTCTGCACCTTGTAGTGTAGACGATCAATGGGAAGGTGTTGTTTGCAACAATGGCCTTGTCACGGGGCTTCGCCTTGGAGGAATAGGGTTAGTCGGGGAAATACACGTTGATCCATTGCTTGAACTCAAGGGTCTTCGAACTATTAGCCTTAACAACAACTCTTTCACAGGTTCCATGCCAGAGTTCAACCGAATAGGCTTTTTGAAAGCCTTGTATTTGCAAGGAAACAAGTTTTCTGGGGATATTCCTCAGGAATACTTCCAGAGAATGAGGTCTTTGAAGAAAGTGTGGCTTTCTGATAACCAATTCACGGGGAATATTCCACATTCATTGACTGAGATTTCTAGTCTTATGGAGTTGCACCTTGAAAATAACCAGTTTAGTGGAACCATTCCGGATTTCAAAAACCCAACATTGGAGGACATAAATGTTTCCAACAACAAATTGGAAGGTGAAGTTCCAGCTAGTTTGTTGAGATTCAGTGAGAACAGGTTTTCTGGGAATTCTGCTCTTTGTGGTGAGAAGATTGGCAAAACATGTGAAAAGCCAGCGGAGGTCCCAAGTCCTGCTCCCATTGATGCATCGGATGCTGGTGGTGATTCGCCTGTGCCACATAGTAGTACCCCATGGGAGGTTGCTGCCATTATAGTAGTGAGTGTAGTGCTTGTTTCAATAGTTGTATTTTTCATTGTGAGAACAAGAAAAAAGAAGGAGGAGGAGCGCTTTGATATCCTTGGAAATGATGCTAATGGTGGTGGTTCAGTGGAAGTTCAAGTGGCTACAACGGTGAAAAGGGATGTGGATGCAAATACATTGCCAGCAGTTAAAAAATCATCGTCCAGAAGAGGATCTGCAGCTTCTCAAAGTAAAGGCGTTGGAGAACTTGTGATAGTGAATGATGAGAAGGGCGTGTTTGGATTGCCAGATTTGATGAGGGCAGCAGCAGAAGTTCTGGGAAACGGTAGCTTTGGATCTTCTTACAAAGCCGTCATGGCTAATGGAGTGGCAGTGGTGGTGAAAAGGACCAGAGAGATGAATGTTTTGGAAAAAGATGGTTTTGATGCAGAGATGAGGAAGCTCACTTCGCTTAAACACTGGAATATATTGACCCCTTTAGCTTATCATTTCAGAAAGGATGAGAAACTAGTGATCTCTGAGTATGTTCCCAAAGGCAGTCTACTGTTTTCACTTCATGGTGACAGAGGATCATCGCATACTGAGCTGGATTGGCCTGCACGTATGAAGGTTGTAGGTGGAATTGCGGAAGGGATGAATTATCTTCACAAAGAACTTGGTTCCTCAGATCTCCCACATGGGAATCTCAAGTCCAGCAACGTTCTTCTGGGACCAGACAATGAACCACTGCTTGTAGATTACGGATTCAGCGGCATGGTTAACCCTGCAAGTGCTGCACAGACACTATTTGCTTACAAGGCACCAGAGGCAGCAGAAAACGGGGAAATTTCACATAGCTGTGATGTTTACTGTCTCGGGGTTGTGATACTTGAGATACTCACTGGGAAATTTCCTTCACAATATCTTAGCACTGGGAAAGGTGGAACCGATGTGGTGCAATGGGTTGAAACAGCAATCTCAGAGGACAGGGTGGCTGAAGTGGTTGATCCAGAAATTGCAAACTCTAGAAAATCGGTAGGTGAGATGGAGCAACTCCTGCACATCGGTGCTGCTTGCACGAGAAGCAACCCTCTGCAACGGTTAGGCATGGAGGAAGCCTTTAGAAGGATAGATCAGGTAAGATCCGAGAGTGGCCTTGTCAAAGAATCAAGAACGATAGAGGTGTTGCCATCTTTGGTAGATGACTATGAAGATGCACAAGAATTTGAGAGCCAAGGGCATTTTGACAACTCACACAGGAGACATGGAACAGATAGCTTCGGAAGTGTGGATAATATTGAACTTGGCAGCTCCTAG 2379 0.4388 MNTLKHAINTIIIREGYDYNGFNQLLTCSTKSEIFQRGPSHCEVLFALFQRRPPHHACMQGSEEKTREKRKTSRSNDPKEITITFLGFEYALSQILSRVMAIAPATILRPTLMIIVTLPVIYSMTEAEALVSLKSTFTNAQLLNGWVAGSAPCSVDDQWEGVVCNNGLVTGLRLGGIGLVGEIHVDPLLELKGLRTISLNNNSFTGSMPEFNRIGFLKALYLQGNKFSGDIPQEYFQRMRSLKKVWLSDNQFTGNIPHSLTEISSLMELHLENNQFSGTIPDFKNPTLEDINVSNNKLEGEVPASLLRFSENRFSGNSALCGEKIGKTCEKPAEVPSPAPIDASDAGGDSPVPHSSTPWEVAAIIVVSVVLVSIVVFFIVRTRKKKEEERFDILGNDANGGGSVEVQVATTVKRDVDANTLPAVKKSSSRRGSAASQSKGVGELVIVNDEKGVFGLPDLMRAAAEVLGNGSFGSSYKAVMANGVAVVVKRTREMNVLEKDGFDAEMRKLTSLKHWNILTPLAYHFRKDEKLVISEYVPKGSLLFSLHGDRGSSHTELDWPARMKVVGGIAEGMNYLHKELGSSDLPHGNLKSSNVLLGPDNEPLLVDYGFSGMVNPASAAQTLFAYKAPEAAENGEISHSCDVYCLGVVILEILTGKFPSQYLSTGKGGTDVVQWVETAISEDRVAEVVDPEIANSRKSVGEMEQLLHIGAACTRSNPLQRLGMEEAFRRIDQVRSESGLVKESRTIEVLPSLVDDYEDAQEFESQGHFDNSHRRHGTDSFGSVDNIELGSS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00387 792 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Vian9g00387 792 MobiDBLite consensus disorder prediction 57 76 - -
Vian9g00387 792 Gene3D Phosphorylase Kinase; domain 1 433 536 - -
Vian9g00387 792 MobiDBLite consensus disorder prediction 331 354 - -
Vian9g00387 792 MobiDBLite consensus disorder prediction 56 76 - -
Vian9g00387 792 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 117 737 IPR046959 -
Vian9g00387 792 SUPERFAMILY L domain-like 157 313 - -
Vian9g00387 792 FunFam Nuclear pore complex protein NUP107 123 282 - -
Vian9g00387 792 Gene3D Ribonuclease Inhibitor 124 284 IPR032675 -
Vian9g00387 792 SUPERFAMILY Protein kinase-like (PK-like) 465 729 IPR011009 -
Vian9g00387 792 MobiDBLite consensus disorder prediction 764 792 - -
Vian9g00387 792 Pfam Leucine rich repeat N-terminal domain 126 165 IPR013210 -
Vian9g00387 792 Gene3D Transferase(Phosphotransferase) domain 1 537 746 - -
Vian9g00387 792 Gene3D Ribonuclease Inhibitor 287 323 IPR032675 -
Vian9g00387 792 MobiDBLite consensus disorder prediction 764 781 - -
Vian9g00387 792 ProSiteProfiles Protein kinase domain profile. 461 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00387 792 Pfam Protein kinase domain 465 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00387 Vian-Chr9 3710413 3712996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00387 119 734 Receptor kinase-like Gene Family AT3G42880 45.008 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian9g00387 Pkinase 5.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00387 - - var:108346415 1544.64