Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00377 ATGTCTGCATCGATGATCATTGACCCTGTGGTGATATCGGCACCAGAAACTCAATCAGCAGCTAGCATACTAGTTGCACAAAGTGAAGTTGAATTTGCTGTGTGTGACTGTTGTGGACTAACAGAAGAGTGCACCCCAGCCTATATAGAAAGAATCAGGGAGAGGTACCATGGAAAATGGCTCTGTGGGTTGTGTGCTGAGGCTGTTAAGGATGAAATTGTAAGGTCTGAGAGGCTTGTCTGCACAGAAGAAGCAATGGCAAAGCATATGAACTTCTGCAAAAAGTTCAAGGCATCAGGGCCTCCTCCAAATCCAACAGTGCATTTGATATCTGCTATGAGACAAATTCTTAGAAGGAGTTTGGATTCTCCTAGAGTAAGGTCCACACCTAATAGTCCAACTAAGACTATCACAGAAATCCATGGTTCTGTGCTTACAAGGTCTGAGAGCTGCTTCCCTACCCTCACTGAAGGATTGGGATGA 483 0.4472 MSASMIIDPVVISAPETQSAASILVAQSEVEFAVCDCCGLTEECTPAYIERIRERYHGKWLCGLCAEAVKDEIVRSERLVCTEEAMAKHMNFCKKFKASGPPPNPTVHLISAMRQILRRSLDSPRVRSTPNSPTKTITEIHGSVLTRSESCFPTLTEGLG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00377 160 PANTHER OS01G0745000 PROTEIN 22 157 IPR012876 -
Vian9g00377 160 Pfam Protein of unknown function (DUF1677) 30 119 IPR012876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00377 Vian-Chr9 3605605 3606087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00377 - - gmx:100803697 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02079 4 37655293 37655724 Vian9g00377 9 3605605 3606087 ECH
Vian9g00377 9 3605605 3606087 Vian9g00377 9 3605605 3606087 ECH
Vian9g00377 9 3605605 3606087 Vian4g02078 4 37651895 37652338 ECH
Vian9g00377 9 3605605 3606087 Vian7g00492 7 12181483 12218575 ECH