Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00366 ATGTCCCATCAGGAGCAAGCCTTAGTGTCCCTTCTCTCCCAAATCGCCCTTTCCTTCGACGGCGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCTATTCGCACCCTCTTCAAATTCTCCGCCACCTCTGCCGCCCTCCGCAAGCTCCGCCGCGCACCTTCCTTATCTGTATCCGACCTCCGATCACTCCTCGCCGATACTCCCTCTGATGCTGACTCTACCTCTGACGGTGGTACAATCGTAATTGTTCGCGGCACCGTTAATGCCAAGTCTGCCGTTGACGGTTCCTGGAAAACTCTCAGACCGGGCGTCTTGGTCTCTCGAGAGTCCGGTGACAAAGGCGTCATCCTTCAAAGAACTCAAACGACAATCTTACATTTTGGATTGGCAATCGGCAAAAAGAAAGGATTTATCAAGCACATCATCAATTGTGTGCTACTTTTTGGAAACGTGCCTTTTGTTCTGATTGATGTTGGACGGCAACCATCTACTCCTGAGTATGTTGTTGTCAACATGGATGGCTCAAGGCACCCGTTACCTCTGACAACGGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCGCTTTTTGGGCATGAATATCCGGTTGGACTGCTAGATGAAGAGAAAATACTTCCATTGGGGAAGGATATCACTGCTGTTGGCCTTGGCAGTTTAAATAATGGAGTTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTCTATCTGACTTGAGCAAAGATCAGATGATAGTGGATCTTTCCATCAAAACGAAAATTCTGTTTTGGGGTGGCATTACTCTCGGTTCAATGTCAATTGGGATCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCTACAGAGGCAGCTCCAGCAACAAAGGCAAGCAGTGAATAATGTTGAACCTCAGGTGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTCATATGTCTGATGAGGAGAAGGCGTTCTGCCTTCATCCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTGGCACCTAAATGTCCTGTTTGTCGTCAGGAGATTCGAAATTCAGTGCGGATTTTTGAAACATGA 1149 0.4682 MSHQEQALVSLLSQIALSFDGAVLGFALAYAAIRTLFKFSATSAALRKLRRAPSLSVSDLRSLLADTPSDADSTSDGGTIVIVRGTVNAKSAVDGSWKTLRPGVLVSRESGDKGVILQRTQTTILHFGLAIGKKKGFIKHIINCVLLFGNVPFVLIDVGRQPSTPEYVVVNMDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLGSLNNGVAEIKSCKDLPYFLSDLSKDQMIVDLSIKTKILFWGGITLGSMSIGILGYAVVRNWNKWKQWKLQRQLQQQRQAVNNVEPQVDDEIEDVPDGQLCVICLMRRRRSAFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRNSVRIFET 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00366 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 381 IPR013083 -
Vian9g00366 382 ProSiteProfiles Zinc finger RING-type profile. 330 370 IPR001841 -
Vian9g00366 382 SUPERFAMILY RING/U-box 329 376 - -
Vian9g00366 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 381 IPR044247 GO:0004842
Vian9g00366 382 Pfam E3 Ubiquitin ligase 150 282 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vian9g00366 382 Pfam Zinc finger, C3HC4 type (RING finger) 328 375 - -
Vian9g00366 382 CDD RING-HC_SPL2-like 325 371 - -
Vian9g00366 382 SMART ring_2 330 369 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00366 327 379 C3H Transcription Factor Family AT3G06140 41.509 6.52e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00366 K15688 - gmx:100811939 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00366 9 3455454 3463858 Vian9g00366 9 3455454 3463858 ECH