Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00365 ATGATCATGGAACCAAATCCAACATCAGATCATAGTTTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCTCCATTCTTAGACGATCCATATAACTGTAGTGACATTCAACTGTGGGATCAAGACATAAGCAGCCATTATCAAACTGATGCTAATACCAGTTCCCCTAATGCCACCAACATTGCAACTACCACAACACCCCCTGAGCCTTGTGCTTCTAACAACCTTCCACTCTCTGATTTGCCCAAGAAAAGAAGTGCCACTGATGATTCAAGTCTCGGACAACCACAGAACCACAAGCACAAGAAAATCAAGAGTAAACCATTGAATAATGAAGCAGATAGTGGAGACGCAGAAGGGACAACCACAGTTAGAAAACCTGGTGGGAACAAGAAAGGTGCTGCTAAGGGTGTGGCAAATAACTGCAACAACAAGGAAGGAAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGACCCGTGTGCAACACCTCTTGTATGTTCTCCATGAGTTAGCTTCACCTACGGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTGACACACCACTTATCGTCTTCTCTAGTATCTACCTCTACAGGGTACATGACTTTTGCATCTACTGAGCCACGGTTCTTTCAAAAGACACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCAAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGGGAAGACAATGACAATTCGCGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGCATGCAATGGCCAACATTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACTGTTGTCACGGCTTCTTCCACTGAAATTGACACCCCATTTTCTATTGGTCCTCCCGGTGATAACTTCTCATCTAGATTACTTGGTTTTGCTCAGTTAATGAACGTGAATTTGCAGATTAAAAGGCTAGATAATTGTCCATTACAGACACTGAGTGCTCAAAGTGTTGACACCTCCCCGGATGAAATCTTTGTTGTTTGTGCGCAGTTTAGGCTGCATCAGTTAAGTCACAATAGCACTGATGAAAAGAGTGAGTTTCTGAAAGTGCTGAGGAACATGGAGCCCAAAGGGGTGATACTAAGTGATAACAACATGGAATGTTGTTGCAGTGGTTGTGGGGATTTTGCCATGGGGTTCTCTCGAAGGGTGGAGTACTTGTGGAAGTTTTTGGACTCGACAAGCTCAGCGTTTAAGGGTCGTGACAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCAGCAAAGGCATTGACAAACCAGCGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGAATGAAAGAAGCCGGGTTTGTGGGGGAAGTACTTGGTGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATACTAATTGGGAGATGAAAGTTGAAGATGACAATAGAAGTGTAGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGCACCTTGTGGAAGCTGGATGGGAATGATCAGAGCTCAACATTCACATCATGA 1620 0.4512 MIMEPNPTSDHSLDWFEGSVSFFPLPPFLDDPYNCSDIQLWDQDISSHYQTDANTSSPNATNIATTTTPPEPCASNNLPLSDLPKKRSATDDSSLGQPQNHKHKKIKSKPLNNEADSGDAEGTTTVRKPGGNKKGAAKGVANNCNNKEGRWAEQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLVSTSTGYMTFASTEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTEIDTPFSIGPPGDNFSSRLLGFAQLMNVNLQIKRLDNCPLQTLSAQSVDTSPDEIFVVCAQFRLHQLSHNSTDEKSEFLKVLRNMEPKGVILSDNNMECCCSGCGDFAMGFSRRVEYLWKFLDSTSSAFKGRDSDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDTNWEMKVEDDNRSVGLWWKGQPVSFCTLWKLDGNDQSSTFTS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00365 539 MobiDBLite consensus disorder prediction 49 139 - -
Vian9g00365 539 MobiDBLite consensus disorder prediction 49 75 - -
Vian9g00365 539 ProSiteProfiles GRAS family profile. 143 527 IPR005202 -
Vian9g00365 539 Pfam GRAS domain family 153 527 IPR005202 -
Vian9g00365 539 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 134 515 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00365 Vian-Chr9 3452827 3454446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00365 1 527 GRAS Transcription Factor Family AT3G13840 51.554 4.70e-174 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian9g00365 GRAS 5.9e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00365 - - vun:114166202 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00365 9 3452827 3454446 Vian9g00365 9 3452827 3454446 ECH
Vian9g00365 9 3452827 3454446 Vian11g00283 11 2682536 2683894 PCT