Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00344 ATGCAAAGTTTGCGATTGAAACACGAGGTGGGTGAAGGAAAGAACAGGAAGAGACAAGAGGAAGAAGTTAATTACAGAGATAATGATGAGGGAAGAGAGGTTATGGTAAAGGAAAAAAATGATGGAAGTGATATTTTGAAGGCTGCAGGAAGTCAGGGAGGAAACAGCCCAGAAATCACAAAAATGAAAAGAGGAGGACTGAAAGGAAAGGTAATTGAGGAAATTTTTGGGTTAATGAATGAAAGGGCAGAGAGAGAAAGACAAGTGCTTTCAATTGCAAGCAAACAACCCGGAACCTCCTTCTACCCGATAGTTTTTTACTTCCACCATCGCTCTACTCTACTTCAAAAGGTTAATGCATTTTCAATCATGTTTTTGAATTATTGGAGGAAAGATGGGAGAGGTTATTGGGAAGAGGGTAGGCAATTGAGAGGTAAAGGAGGGGAAATTGAGTGTAATGTAACCGAAAATGGAGAGATGAAAGTGAGATGGTTGGGTTTGGAGGTGGGAGAAAATGTGAAAAAAAAGGAGAAAGCATCAATCCGTGGCCAAAAAAAGGAGGATTCAACTCTAGCCTTGGCCTCCAAATCTATCAATGAGATAATGCCACGCATGGTGAAGCCAAAAAAGATTAGAAATGACACGTCTCCTTTCACACCATCTCAGTGGCAAGAGCTTGAGCAACAAGCTCTTGTTTTCAAATACATGGTCACAGGAACACCTATTCCACCAGATCTCATCTACTCGATTAAAAGAAGTCTTGACTCTTCAATTTCTTCCAGACTCTTTCCACATCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAGGCATATCCAGACTCAAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACTAACACCTCCCAAACAATCCCATCTTATACCAGAAACCTTTCCTTGGCAAACCCCACCATAACTTCACCCTCTTTCCCTTTCTCTCCTTTGCCCTCTTCTATGCCCTGTGACTCCCAACCCTTTTCCCAATCCTACCAAAACCCTTCTCTCAATCCCTTTTTCTATGCCCAATCAACCTCCTCCAGACCCCCAGATTCTGATTTTTCACCTCAAGATGCCACTACCCACCAGCTATTCATGGACTCTGCTTCTTATTCTCATGATGAGAAGGATTACAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAAAGAGCTTTCTTCCCGGAAGCTTCAGGATCAGCGAGGAACTATTCTGACTCGTATCAGCCGCTATCAATGAGCACCTACAAGTCCTATTCAAACTCCAGCTTTCAGAACATCAATGATGGCACCAACCAAAGACAGCAAGAGCAACAACACTGCTTTGTTTTGGGGACTGACTTCAAATCAACGAGGCCAAGCAAAGAGAAAGAAGCTGAGACAACAAGCCAGAGACCCCTTCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGGTAACAATGATCATGCTGCTTCCCTACTTTCATTATCATATCCTTTTTAA 1674 0.4355 MQSLRLKHEVGEGKNRKRQEEEVNYRDNDEGREVMVKEKNDGSDILKAAGSQGGNSPEITKMKRGGLKGKVIEEIFGLMNERAERERQVLSIASKQPGTSFYPIVFYFHHRSTLLQKVNAFSIMFLNYWRKDGRGYWEEGRQLRGKGGEIECNVTENGEMKVRWLGLEVGENVKKKEKASIRGQKKEDSTLALASKSINEIMPRMVKPKKIRNDTSPFTPSQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSYTRNLSLANPTITSPSFPFSPLPSSMPCDSQPFSQSYQNPSLNPFFYAQSTSSRPPDSDFSPQDATTHQLFMDSASYSHDEKDYRHVHGIREDVDERAFFPEASGSARNYSDSYQPLSMSTYKSYSNSSFQNINDGTNQRQQEQQHCFVLGTDFKSTRPSKEKEAETTSQRPLHRFFGEWPPKNTDSWLDLASNSRIPTGNNDHAASLLSLSYPF 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00344 557 PANTHER GROWTH-REGULATING FACTOR 5 187 537 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vian9g00344 557 MobiDBLite consensus disorder prediction 494 514 - -
Vian9g00344 557 ProSiteProfiles QLQ domain profile. 217 252 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian9g00344 557 MobiDBLite consensus disorder prediction 1 44 - -
Vian9g00344 557 MobiDBLite consensus disorder prediction 498 512 - -
Vian9g00344 557 Pfam QLQ 217 250 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian9g00344 557 SMART QLQ_2 216 252 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian9g00344 557 MobiDBLite consensus disorder prediction 323 345 - -
Vian9g00344 557 Pfam WRC 283 325 IPR014977 -
Vian9g00344 557 MobiDBLite consensus disorder prediction 314 345 - -
Vian9g00344 557 MobiDBLite consensus disorder prediction 386 407 - -
Vian9g00344 557 MobiDBLite consensus disorder prediction 1 62 - -
Vian9g00344 557 ProSiteProfiles WRC domain profile. 282 326 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00344 Vian-Chr9 3288873 3291749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00344 217 325 GRF Transcription Factor Family AT3G13960 75.229 8.36e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vian9g00344 WRC 3.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00344 - - gmx:100806024 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00344 9 3288873 3291749 Vian9g00344 9 3288873 3291749 ECH