Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00330 ATGTCTTTTCTGGTTTCTCATAAAATCAAATACGTTGCATTCATTTGTCTCGTGTTTGTAACATCTTCTACATCTTCCAATGACACTTCTCAAATAAAGTACGATGTATTTGTTAGCTTCAGAGGTGAAGATGTCCGTAGAGGTTTCCTTAGCCATTTGATCGAGGCATTTTCTCAGAAGCAAATCGCTTTCTTCGTAGATGATAGCATTCAAAAAGGGGAAGAACTATCTGAAGCCCTATTTGGAGCAATTGAAGAATCATATATTTCTTTGGTTATATTTTCAGAAAACTATGCTTCTTCAAGATGGTGTTTGTCAGAACTTGAGAAAATCTTGGAGTGCAGGAGAGAAAATGGACAAACTGTAGTGCCTATTTTCTACAAAGTTGACCCCTCAGACATACGACATCAACGGAGGACTTATGGAGATGCCTTTGTCAAACACGAAAAAAACTATTCCTTGACTACTGTGCAAACCTGGCGATCAGCTTTGAGTGAATCTGCTAATCTATCAGGATTTCATTTATCCCAATTTCTAGATGAAGCTGAACTTGTTAAAAAGATTGTTAAATCTGTCTGGAGGACGTTGAATCATGTTCACCAAGTTAACTCCAAAGGGCTTGTTGGAATTGGTAAACGAATAGCACAAGTTGAATCATTGCTGCAATTAGAAACAAAAGATGTTCGCATGATTGGAATTTGGGGCATGGGAGGTATTGGTAAGACAACTATTGCGCAAGAAGTATATAATAAACTGTGTTTTAAATATGATAGTTGTTGTTTTCTGGCTAACATAAGGGAGGAGTCATGGAGACATGGAATAAACTCTTTGAAGGAAAAGCTTTTTTCAACATTATTAAGAGAAGAACATTTGAAAATTGGCAGACCTTTTGGGTTCCAGAAGTTAGTTGAGAGAAGACTTCATCGGATGAAAGTTCTTATTATTCTCGATGATGTCGGTGACGCAGAGCAACTAGAAAATTTAGCCAGAACAGATTGGTTTGGATCTGGTAGTAGAATCATTGTGACAACCAGAGATAAACAGGTGCTTGCTGAGGAGTCTGCCAGTGTATACCATGTTGAAGCCTTAAACTTTGATGAATCTTTGCGACTTTTCAATTTAAATGCCTTTAAGCAAAATCATATAGAGACAGAGTACGAGGAGCTGTCAAAGAAAGCAGTTGATTACGCCAAAGGCATTCCGTTTGTTCTTAAAGTTCTGGGTCACCGTCTTCATGGGAAAGACAAAGAGACATGGGAAAGTGAATTAGAAAGACAAGAAGTGCACAACAAAAAGGTTCATGATATTATTAAATCGAGTTACTATGATCTTGAGGAGGATGAAAAGAGGATATTTTTGGATATTGCATTTTTTTTTATGGGCAGCAACTGCAGGTAA 1398 0.3734 MSFLVSHKIKYVAFICLVFVTSSTSSNDTSQIKYDVFVSFRGEDVRRGFLSHLIEAFSQKQIAFFVDDSIQKGEELSEALFGAIEESYISLVIFSENYASSRWCLSELEKILECRRENGQTVVPIFYKVDPSDIRHQRRTYGDAFVKHEKNYSLTTVQTWRSALSESANLSGFHLSQFLDEAELVKKIVKSVWRTLNHVHQVNSKGLVGIGKRIAQVESLLQLETKDVRMIGIWGMGGIGKTTIAQEVYNKLCFKYDSCCFLANIREESWRHGINSLKEKLFSTLLREEHLKIGRPFGFQKLVERRLHRMKVLIILDDVGDAEQLENLARTDWFGSGSRIIVTTRDKQVLAEESASVYHVEALNFDESLRLFNLNAFKQNHIETEYEELSKKAVDYAKGIPFVLKVLGHRLHGKDKETWESELERQEVHNKKVHDIIKSSYYDLEEDEKRIFLDIAFFFMGSNCR 465
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00330 465 Pfam NB-ARC domain 220 437 IPR002182 GO:0043531
Vian9g00330 465 Gene3D - 27 198 IPR035897 -
Vian9g00330 465 FunFam Disease resistance protein (TIR-NBS-LRR class) 30 198 - -
Vian9g00330 465 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 173 IPR035897 -
Vian9g00330 465 PRINTS Disease resistance protein signature 230 245 - -
Vian9g00330 465 PRINTS Disease resistance protein signature 306 320 - -
Vian9g00330 465 PRINTS Disease resistance protein signature 397 411 - -
Vian9g00330 465 Gene3D - 199 362 IPR027417 -
Vian9g00330 465 Gene3D - 363 445 IPR042197 -
Vian9g00330 465 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 459 IPR044974 GO:0006952
Vian9g00330 465 ProSiteProfiles TIR domain profile. 32 196 IPR000157 GO:0007165
Vian9g00330 465 SMART till_3 33 170 IPR000157 GO:0007165
Vian9g00330 465 Pfam TIR domain 33 208 IPR000157 GO:0007165
Vian9g00330 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 455 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian9g00330 Vian-Chr9 3153890 3155439 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00330 29 459 WRKY Transcription Factor Family AT4G12020 29.909 8.02e-48 175
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00330 - - pvu:PHAVU_010G131900g 757.673