Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00329 ATGGATCTGTTTCCTTGGTGTCTGATAATTGGAACACTGGCAATTTCTTTCACGTTCTTCACTCTCGTAATGCTTGGATGGTGCTTGGATACCAATCACATATTATCCCTTCCTACAACAGGCTTATCTTTTGATGACAAGTTCTCTCCTTGCATGAGTTTGGAGTCTCATTCGATGACCTTCAACTACCAGGCTGCAGAGGGCACACACCAGACTGAATGTGTTATCTGTTTGACAAGTTTTGAAGAAGAGGAAAGTGTACGGAAGCTTCACACTTGCAAGCACATCTTCCACACCCTTTGCATTGACAAGTGGCTTGGATCTCATTCAGGTTGTCCACTGTGCCGCACTCAGATTGATAAAGTGAGTTCCCAAAACAGTAGAGTGTCTTTGGAAGAAAATGATCACATGATCATGGTCATTGTCAACTCCTGA 435 0.4322 MDLFPWCLIIGTLAISFTFFTLVMLGWCLDTNHILSLPTTGLSFDDKFSPCMSLESHSMTFNYQAAEGTHQTECVICLTSFEEEESVRKLHTCKHIFHTLCIDKWLGSHSGCPLCRTQIDKVSSQNSRVSLEENDHMIMVIVNS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00329 144 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 126 - -
Vian9g00329 144 Pfam Ring finger domain 73 116 IPR001841 -
Vian9g00329 144 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Vian9g00329 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 126 IPR013083 -
Vian9g00329 144 SMART ring_2 74 115 IPR001841 -
Vian9g00329 144 SUPERFAMILY RING/U-box 73 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00329 Vian-Chr9 3126517 3126951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00329 62 130 C3H Transcription Factor Family AT1G72220 48.571 8.57e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00329 - - gmx:102661636 264.618