Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00321 ATGAAGAACTTAAATGAAAAAGGCTCTGGTTCTACCCATTTAACAGCTCCTTATGCTCTTGGATGCTCGTCATGGGGGGCTTCCTCTGAATCTGATGTTCAACAATCATCCATGTCCAGAGGTTTGACCTTGAAAATGGGTGTTCTGCCGCAGCAAGGCCGTAAGACTAAGCCATTGAATTTTCATTATCAAGACCGAGATTCTTCTTCATCTCAATCAACTGGTCAGTCTTATCCGGAAGTTGGTTCAGCGCAATCAGGTCAATTTTCAGTTCAGTGTAGCAATTCTTCTGCTTGTTCGACACTTAACACAGCTGGGAGAAAGAGTATAGAAGGTGTAATCAGGTCATCTGTTCGTGGTCAGGATTTTACCTTACCTCCTTCACAAATGTGTCACAACCAGCCACTTGCTCATACTGCATTCCATCTTGCTGAGCCATGCTTTAGTGGCCTACTAGCTTCTCCATATGGCCCACAACCTAATATTCATCCTGCTCAGCTGATAGGAATGCCTACTGCTAGAATTCTTCTGCCACTTGATCTTAGTGAGGAGCCTATATTTGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGCAGACAATACCGGGCAAAACTTGAATCACAGAACAAGCTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCATTGAAGAGAGCCAGAGGTTCTGGTGGTCGCTTCTTGAATACAAAAAAGCATGAAGAGTCTAAACCCACTTCACAAAACCATGACATAGATGTTTCGAGGTGTACTCATTTGAATCTGAGGGGAAACATGTCAGAATCTAAGGCTCGTCAGTTGAACTACAGAGATGGTGCTTCCACAGCCACCTGTTCAGATATTTCTAGTGCATCTAATAGTGGTGATCTCTTCCAGCAACATCAACCTGACATTAGATTATGTGGTTACCCTTCTCATATAGGAAGGAACATGCAGGGTTACTCTGCTGATATCAGTGGTGGTGGTGGTGGTGGTGGTGCAAACCAGCGTCGTCTATCAGTCCTTATGTGA 1047 0.4422 MKNLNEKGSGSTHLTAPYALGCSSWGASSESDVQQSSMSRGLTLKMGVLPQQGRKTKPLNFHYQDRDSSSSQSTGQSYPEVGSAQSGQFSVQCSNSSACSTLNTAGRKSIEGVIRSSVRGQDFTLPPSQMCHNQPLAHTAFHLAEPCFSGLLASPYGPQPNIHPAQLIGMPTARILLPLDLSEEPIFVNAKQYHAILRRRQYRAKLESQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKHEESKPTSQNHDIDVSRCTHLNLRGNMSESKARQLNYRDGASTATCSDISSASNSGDLFQQHQPDIRLCGYPSHIGRNMQGYSADISGGGGGGGANQRRLSVLM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00321 348 Gene3D - 182 243 - -
Vian9g00321 348 ProSiteProfiles NF-YA/HAP2 family profile. 182 242 IPR001289 GO:0003700|GO:0006355
Vian9g00321 348 MobiDBLite consensus disorder prediction 63 83 - -
Vian9g00321 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 239 IPR001289 GO:0003700|GO:0006355
Vian9g00321 348 MobiDBLite consensus disorder prediction 239 254 - -
Vian9g00321 348 PRINTS CCAAT-binding transcription factor subunit B signature 185 207 IPR001289 GO:0003700|GO:0006355
Vian9g00321 348 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Vian9g00321 348 MobiDBLite consensus disorder prediction 59 83 - -
Vian9g00321 348 SMART cbf3 181 242 IPR001289 GO:0003700|GO:0006355
Vian9g00321 348 MobiDBLite consensus disorder prediction 234 256 - -
Vian9g00321 348 ProSitePatterns NF-YA/HAP2 subunit signature. 187 207 IPR018362 GO:0003677|GO:0016602
Vian9g00321 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 39 306 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00321 Vian-Chr9 3027964 3030599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00321 9 333 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.943 6.32e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian9g00321 CBFB_NFYA 3.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00321 K08064 - gmx:100500765 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00321 9 3027964 3030599 Vian9g00321 9 3027964 3030599 ECH