Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00307 ATGTCAGACCCGAAGACCCGGACCCGAGCTTACGATCCCTACAAGGATCTCGATGCTCCAATTCGAAACCTCTACCACCTCCCAACCTCGCCGGAGTTCCTCTTCGTTGAAGAGGCCCGCCGCAAGCGCCGCTCATGGGGCGAGAACCTCACCTTCTACACCGGATGCGGCTACCTGGCCGGAGCCCTCGGCGGCGCCGGCTCAGGACTCCTAGACGGTGTCAGGGCCTTCGAGTCCGGCGACACAACGAAGGTCCGAATCAACCGCGTCCTGAACGCGGCGGGACACTCGGGTCGGGTCTGGGGAAACCGGGTCGGGATACTAGGGTTACTCTACGCCGGAATCGAAAGCGGAATCGAGGCGGCGAGAGACGCCGACGACGTATGGAATAGCGTCGCAGCGGGGCTCGGCACCGGCGCACTGTACCGGGCGGCGAGAGGGGTGAGATCAGCGGCGGTAGCCGGAGTGGTGGGCGGCGCTGTCGTGGGAGTGGCCGTGGCGGGGAAGCAAGCGTTGAAACGATATGTGCCTATATGA 537 0.6425 MSDPKTRTRAYDPYKDLDAPIRNLYHLPTSPEFLFVEEARRKRRSWGENLTFYTGCGYLAGALGGAGSGLLDGVRAFESGDTTKVRINRVLNAAGHSGRVWGNRVGILGLLYAGIESGIEAARDADDVWNSVAAGLGTGALYRAARGVRSAAVAGVVGGAVVGVAVAGKQALKRYVPI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00307 178 PANTHER TIM23 20 166 IPR045238 GO:0022857
Vian9g00307 178 Pfam Tim17/Tim22/Tim23/Pmp24 family 52 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00307 Vian-Chr9 2865240 2865776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00307 8 174 Chloroplast and Mitochondria Gene Families AT1G17530 65.680 4.62e-75 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00307 K17794 - gmx:100813158 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00267 11 2553888 2554454 Vian9g00307 9 2865240 2865776 PCT