Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00291 ATGGGGAATCAAAAGCAGAAGTGGACGCAGGACGAGGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAAAACATTCTCAAAGATCCCCAATTTGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCCAAAGACAAGCCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCTTCTTCTACCACCTCCACCACCACCACCGCCACACCTCAAAACGCGGCTTCTGCTCCACAAAACGTACCGTCTGATGTCACTGTCCCTGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAGTGCCATTGTTAGTTTCATCGAGGTACAAAATTTTTACAAAATAAAAAAGGATGTCCCCTCGGGAACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCAGCACCGTCACAACCTGCACCACAACCACAATGGCAGTCCTCGGTTTCTGTCTTTACAGCATCTAATGAGACAATAAAGGATGCTGCAGATACTGCAGCCTACAGAATTGCCGATGCTGAAAGTAAGTCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAGAAAATATCATTGCTGGTTGAACATAGTGATTCGATGTTGGAGCTAGCAAAAGACATATATGAACAATGTTCTCGAGACGCGATTTGCGCGAAGTTGAACGGAGAAGACAAAAAAGCGTCGAGAGATGGAGGTTGCTTCGCGCATGTTGCTGCAGGCATAATGGCTTGGACGGAGGGTTGCGAAGAAGATGATGACGTGCGATTTCGCGAGTGTAATTTGGGATTTTATGGAGTTGTCCATGGTGGACTCATGGTGATGGCCATGGAAAAGCAGAAGTGGACGCAAGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCTCAATTCGCCCCTTTCCTCACTTCTCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGTCTCCAAAGACAAACCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCACCTCCAACTGCTGCCACCTCCTCCACCGCCACCGCTCCTCAAAACGCCCTCCCTGCTCCTCAAAACGCACGGACTGAGGTCGCTGCCCTTGATTCTTCTCCGAATGGTCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAGGATAATAATGGATCTGACCTAAGTGCCATTGTTAGTTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGCTATAGGCTCCCTCCCGCCGGGGACTTTCCATGCAAGCATAAATGTACAAAATTGTTACAAAATAAAAAAGGATGTCACCTCCGGGGCAAAATCACCTCCACCGAAACCAAAGGATGTCCGGCCACGGCAATTACAACCACAACCAGAACGGCAATCCCCAGCTTCTGTCATTACGGCATCTAATGATACAATAAAGGAAGCTGCTGATACTGCGGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGTTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCAAAAGACATATATGAACAATGTTCGCGTGGTGAAATTATCCTCTTGGCTTAA 1878 0.4707 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPPPPSSTTSTTTTATPQNAASAPQNVPSDVTVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLSAIVSFIEVQNFYKIKKDVPSGTKSPSPKPKDVRPAPSQPAPQPQWQSSVSVFTASNETIKDAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLELAKDIYEQCSRDAICAKLNGEDKKASRDGGCFAHVAAGIMAWTEGCEEDDDVRFRECNLGFYGVVHGGLMVMAMEKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQVSKDKPRVPKLKALPPPPPPTAATSSTATAPQNALPAPQNARTEVAALDSSPNGQDVKNPPRYNAMVFEALSALKDNNGSDLSAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKAIGSLPPGTFHASINVQNCYKIKKDVTSGAKSPPPKPKDVRPRQLQPQPERQSPASVITASNDTIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00291 625 MobiDBLite consensus disorder prediction 80 120 - -
Vian9g00291 625 MobiDBLite consensus disorder prediction 55 122 - -
Vian9g00291 625 MobiDBLite consensus disorder prediction 406 439 - -
Vian9g00291 625 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vian9g00291 625 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 323 380 IPR017930 -
Vian9g00291 625 FunFam Telomere repeat-binding factor 1 320 376 - -
Vian9g00291 625 Pfam Myb-like DNA-binding domain 323 374 IPR001005 -
Vian9g00291 625 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vian9g00291 625 SMART sant 4 59 IPR001005 -
Vian9g00291 625 SMART sant 322 377 IPR001005 -
Vian9g00291 625 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Vian9g00291 625 MobiDBLite consensus disorder prediction 525 561 - -
Vian9g00291 625 SUPERFAMILY "Winged helix" DNA-binding domain 121 156 IPR036390 -
Vian9g00291 625 CDD SANT_TRF 324 374 - -
Vian9g00291 625 CDD SANT_TRF 6 56 - -
Vian9g00291 625 CDD H15 442 509 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian9g00291 625 MobiDBLite consensus disorder prediction 376 442 - -
Vian9g00291 625 Gene3D - 437 523 IPR036388 -
Vian9g00291 625 SUPERFAMILY "Winged helix" DNA-binding domain 441 509 IPR036390 -
Vian9g00291 625 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 440 523 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian9g00291 625 Pfam linker histone H1 and H5 family 442 508 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian9g00291 625 SUPERFAMILY Homeodomain-like 322 376 IPR009057 -
Vian9g00291 625 MobiDBLite consensus disorder prediction 162 191 - -
Vian9g00291 625 Gene3D - 320 376 - -
Vian9g00291 625 Gene3D - 2 58 - -
Vian9g00291 625 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Vian9g00291 625 ProSiteProfiles Myb-like domain profile. 318 375 IPR001005 -
Vian9g00291 625 SMART h15plus2 438 503 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian9g00291 625 SMART h15plus2 119 167 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian9g00291 625 FunFam Telomere repeat-binding factor 1 2 58 - -
Vian9g00291 625 MobiDBLite consensus disorder prediction 545 561 - -
Vian9g00291 625 PANTHER SINGLE MYB HISTONE 4 152 261 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00291 Vian-Chr9 2612443 2621323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00291 319 625 Single Myb Histone (SMH) Gene Family AT1G72740 46.254 1.76e-69 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian9g00291 Linker_histone 2.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00291 K09422 - gmx:780537 396.356