Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00285 ATGGAGATGGAGAGGTACACCAGTCAGCGGTGGAGACCTACTGACGATCAGGTCAAGATGATGACCAGAATCTACAACTTTGGGGTCACACACCCAAGCAGAGCGCAAGTTGTCGAGATCGCGTCTCGACTAAGGACCTTCGCAGATGCCAGCGAATACAACGTGCACTGCTGGTTCAACAATCATGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCAGTTTTCACAACTGCCGCTATACATGTATGAATACGACTGGGTGATCATGAGGGCGCCGAGGCTGCTGAACTTGTTCCCCGTTCCGATCATCATTGACGACGACAGGGACGGACGACAAATCGCTCCACCCATGCTTCTCACATTCCGGACCAGAGCCCCCTCGACAGAGCTCTCCCTTAGACCACCACAACCGGCTCGGGAATTTTTTCGCTGA 450 0.5444 MEMERYTSQRWRPTDDQVKMMTRIYNFGVTHPSRAQVVEIASRLRTFADASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYEYDWVIMRAPRLLNLFPVPIIIDDDRDGRQIAPPMLLTFRTRAPSTELSLRPPQPAREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00285 149 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian9g00285 149 Gene3D - 8 73 - -
Vian9g00285 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
Vian9g00285 149 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 72 IPR044559 GO:0003700
Vian9g00285 149 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00285 Vian-Chr9 2561445 2561994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00285 7 72 Wox Gene Family AT5G59340 37.879 6.43e-11 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian9g00285 Homeodomain 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00285 - K03992 vum:124821070 281.567