Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00277 ATGGGTGGTTCTGGGAGATGGCTTAAGTCGCTCATTTCTCTCAGGAAGCCCTCCGCAACTGATCAAGAGAAGGGTGGTGACAAGAGTAAGAGAAAGTGGAAGTTATGGAGGGGCACTTCAGAAGGGTTTGGGATTGGATCATCCATGCAGAAGGGGCAGAGTGGTGGTGGGTCCTTTGTGGTGGATGATGGGGCATTTGCTGCTGCTTTGGCTGCTGTGGTAAGAACTCCACTCAAAGACTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGAATACAGGCAGTGTTTCGTGGTTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGAGCAGTGGTGAGGTTGCAAGCTATATTTCGTGGTTGGCAAGTGAGGAAGCAAGCAGCTGTTACTCTAAGATGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGGGGAAAGCTGTCAGTGAGCCCTGCAATGAAGCTGACCCTGTTCAGCAAGCTGAGCAAGGATGGTGTAACATTCCAGGAACTGCGGAAGAAGTTAAGGCAAAATTACAGATGAGGCTGGAAGGATCAATTAAGAGGGATAGGACAAAGGCATACTCTCAGTCTAAGCAGAAATCAACAGTGAGTGCTAGTCCAAACTCAAAAGGTGCTAGGGCAGTGATTCCTCCTCTCAAGCACCGCAGTCTAGATAGTAAGAGCTCAGGATGGGGCATGTTAGATCGCTGGATGGCTGCAAAACCATGGGAGAGCAGGTCGATGGTAGACATGTATTTGGACTCATCTGACATGATTCCAGCAGTTACTAGTAAAAGTGATCATTTTGTTCTTCCCTTGAATTCTGATCAACAAAATGGCTCAGTCAAAGCAAGAAGGAATGGTGTGACAACCAGGATTTCATCTAAGTCACTTACGACTAGTCAATCAACTCCATCATCTTCATCCATAAGCTCTGAATGCATGTATGATGATAGCCCTTTGTCAACTTCATGCACATCTGAATCACCACCTGTGCCATCTACCAACAATGTTATAGTGGACACAACAGAGGAAGGAAATGTTTGTAAACCAAGCTACATGAATCTGACAGCATCGACAAAAGCTAAACTGAAACCCTATAGGTGTTTTTCTCAGAATTCTAAGAGAATTTTTATGGATGATTGTGTGTCACTTAGCGGAGTTACTAGAAGCAGTTCTGGTTCCTATCCTTCTGCTAATATGTGGAAGAATATCTATGCAACACCTTTAAGGACACGTTATCAAAAGCAATATACAATGGAAGATAAGTAG 1293 0.4532 MGGSGRWLKSLISLRKPSATDQEKGGDKSKRKWKLWRGTSEGFGIGSSMQKGQSGGGSFVVDDGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQARVKARNVGKAVSEPCNEADPVQQAEQGWCNIPGTAEEVKAKLQMRLEGSIKRDRTKAYSQSKQKSTVSASPNSKGARAVIPPLKHRSLDSKSSGWGMLDRWMAAKPWESRSMVDMYLDSSDMIPAVTSKSDHFVLPLNSDQQNGSVKARRNGVTTRISSKSLTTSQSTPSSSSISSECMYDDSPLSTSCTSESPPVPSTNNVIVDTTEEGNVCKPSYMNLTASTKAKLKPYRCFSQNSKRIFMDDCVSLSGVTRSSSGSYPSANMWKNIYATPLRTRYQKQYTMEDK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00277 430 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Vian9g00277 430 SMART iq_5 85 107 IPR000048 GO:0005515
Vian9g00277 430 SMART iq_5 108 129 IPR000048 GO:0005515
Vian9g00277 430 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Vian9g00277 430 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Vian9g00277 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 128 IPR027417 -
Vian9g00277 430 Gene3D - 83 156 - -
Vian9g00277 430 MobiDBLite consensus disorder prediction 279 322 - -
Vian9g00277 430 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Vian9g00277 430 MobiDBLite consensus disorder prediction 195 220 - -
Vian9g00277 430 PANTHER IQ-DOMAIN 5-RELATED 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00277 Vian-Chr9 2492785 2495303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00277 1 413 IQD Protein Family AT1G72670 42.627 4.81e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00277 - - vun:114166337 752.281