Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00276 ATGGGGCACCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTTTGGTCACCCGAAGAGGATGAGAAACTCATCAACTACATCACAACTTACGGACATGGCTGCTGGAGTTCTGTCCCAAAACTTGCAGGCCTGCAAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTGAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCTCTCATTATTGAACTCCATAGCATTTTAGGGAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCCTTTCTCATGATGCTGTCATTCCTCCTTTAGCCACATTTTCTGATTTTCATCACAGCCCCATCACTTCCATGGAAACTTTCTTCCCTTTTACTGCAAACCCTAATCTCATCTTAAACTTCCACCATTTCACAGACCAGCTCTACCTTCCCACCACACCATCCCCATTCCTACAAGCTTTTGATCACAACAATGATGTCAAGTTAGGTTTCAACGCTTACAATGCCGATTTCCTTCATATTCAGAATCCAGCACTACCAGAAACAGCACTACCATCTTCCAACCCAAATGAAGAAAATCAAATCTCCAAAAGTGACACCACCTCGGACTATGTTCTTGACAGATTCATCAACCCAGCAGCATTGCAGCAACATGAATATCTCTTGGTAGAAGAACCCCTTGTGCCAATAGTCAGTGAGAACATTGAGGATAATTATGTTTGCAGCATCCCATTCTCATCCACTCCCCAAGAACAACACGAGACTACAGCAAAATTTCAGTGTTATCCACAAGATCTAGCTGTGGCAGTGAACCAATTAGAGTACATTGATGCCTTCATGTCATTGTTGCCATCTTCAACAGTTTCAAGCACCCAAAAAGTCCCAAACCCTATTATTCCCTCAGGATGGGAGCCTTGA 984 0.4329 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDAVIPPLATFSDFHHSPITSMETFFPFTANPNLILNFHHFTDQLYLPTTPSPFLQAFDHNNDVKLGFNAYNADFLHIQNPALPETALPSSNPNEENQISKSDTTSDYVLDRFINPAALQQHEYLLVEEPLVPIVSENIEDNYVCSIPFSSTPQEQHETTAKFQCYPQDLAVAVNQLEYIDAFMSLLPSSTVSSTQKVPNPIIPSGWEP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00276 327 SMART sant 66 114 IPR001005 -
Vian9g00276 327 SMART sant 13 63 IPR001005 -
Vian9g00276 327 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian9g00276 327 Gene3D - 11 67 - -
Vian9g00276 327 CDD SANT 17 61 IPR001005 -
Vian9g00276 327 FunFam Myb transcription factor 69 116 - -
Vian9g00276 327 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian9g00276 327 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian9g00276 327 FunFam MYB transcription factor 6 66 - -
Vian9g00276 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian9g00276 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian9g00276 327 Gene3D - 69 116 - -
Vian9g00276 327 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Vian9g00276 327 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian9g00276 327 PANTHER MYB DOMAIN PROTEIN 55 1 174 - -
Vian9g00276 327 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00276 Vian-Chr9 2480121 2481373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00276 1 118 MYB Transcription Factor Family AT3G13890 96.610 3.09e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian9g00276 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00276 K09422 - gmx:100785147 516.153