Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00267 ATGGAGATGAAGGGTTTTGTGTTCAACCAACATCAGCAGCAGCCAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCCAGTGCTTCCTCAGGCAACAGAACTGAAATTGGAACCAGTTACCCTCAACAATACTTGGCTCCACCACCATCTCAGACTCAGCCACCAAAGAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGATGCTGAAGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCCACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTGCAACTTCACAGAAGAGGGCACAATTTGCCGTGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGGCAAATTGTGTGCATCATGACCCGTCAAGGGCTCTTGGGGACCTGACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAAGCCCATTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCAATCACTGGCACAGGCAACAACCAACTTCTTCCCCCACAACAGCCTTCTTCCTCTCATCAGCACCACCACCACAACATGACCCTTCAAACCCAATTCAACCCTCAAAATCTCCATGCTTTCTCATTGAAAAAAGAGCAGCAAAGTTTCAATCTTAGGCCAGAAATGCCCCCTTGGCTGGGCCCACCAACAACAGTTGATAATCTCTCCTCATCCCCATCCATAATGTTCTCTCCCTCTCCACACCAAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAAACAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGGCAAGGGCCCACCATCAGGTTCACATGACTTCTTCAGCAGATTCTGCCACTGCTCACTTTGGCTTGAACTTGTCCTCACGTGATCAAGACAACACCACCACCACTTCAACAGCACCAACCACTGTTACGACTAACACTCCTACAGTGTTTAGCCATGGCTTGCTATCATCATCATCATCATCACCTTTGGGGAATAAAGCTGCTGCTGCTGCTGCTGTGTCTTCTGCTCCATCCCTTCTCCATGATGTTATACGCTCTTTCTCTTCTCCCTCTGCCTTCCAAGGAACCCCTTTTGAGGATGCATTTGGTGGCATTCAGAGTTCAAAAAAACTAGATGACGATAGCTTGTATCTGCATGATACCTTCTCAAAAGCAAGTGGTGCAGCAGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTCAGGCCACTCTCTCATAATGATATTCTCACCATTGCTGGCATTGGAAACTGCATTCATGATCAGCAAAATCAATCTCAAAAGCCATGGCAAGGTTAG 1584 0.4779 MEMKGFVFNQHQQQPVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLAPPPSQTQPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEANCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTGNNQLLPPQQPSSSHQHHHHNMTLQTQFNPQNLHAFSLKKEQQSFNLRPEMPPWLGPPTTVDNLSSSPSIMFSPSPHQENPNPSLGPTLAAYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMARAHHQVHMTSSADSATAHFGLNLSSRDQDNTTTTSTAPTTVTTNTPTVFSHGLLSSSSSSPLGNKAAAAAAVSSAPSLLHDVIRSFSSPSAFQGTPFEDAFGGIQSSKKLDDDSLYLHDTFSKASGAAGNEGLTRDFLGLRPLSHNDILTIAGIGNCIHDQQNQSQKPWQG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00267 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Vian9g00267 527 MobiDBLite consensus disorder prediction 379 400 - -
Vian9g00267 527 MobiDBLite consensus disorder prediction 7 51 - -
Vian9g00267 527 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Vian9g00267 527 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Vian9g00267 527 Gene3D Classic Zinc Finger 144 223 - -
Vian9g00267 527 MobiDBLite consensus disorder prediction 1 75 - -
Vian9g00267 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 505 IPR031140 -
Vian9g00267 527 SMART c2h2final6 131 161 IPR013087 -
Vian9g00267 527 SMART c2h2final6 166 186 IPR013087 -
Vian9g00267 527 SMART c2h2final6 90 112 IPR013087 -
Vian9g00267 527 Gene3D Classic Zinc Finger 71 140 - -
Vian9g00267 527 MobiDBLite consensus disorder prediction 227 248 - -
Vian9g00267 527 FunFam protein indeterminate-domain 12-like 69 137 - -
Vian9g00267 527 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Vian9g00267 527 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00267 Vian-Chr9 2403373 2405535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00267 21 527 IDZ Gene Family AT3G13810 46.924 1.28e-138 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian9g00267 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00267 K25870 - gmx:100808344 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00244 11 2380340 2382480 Vian9g00267 9 2403373 2405535 PCT