LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian9g00256	ATGAGCCGCTACGACAGCCGCTCCGGCGACCCCACTTCTTACCGTGACCGGAGGAGTGATTCTGGCCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAGCACTCTTCGTCAAACAGGAGGGATCATGATGATGGTGGATCACCAAAGAGGAACCTCAGTTTGGATGGTTTACCTCATTTTGAGAAAAACTTCTACATTGAGTCACCTGCAGTAAGGGCAATGACTGATGCTGAGGTTAATGAGTACCGACAGCAGAGGGAAATAACTGTTGAAGGCCGAGATATCCCCAAGCCTGTCAAGACCTTTCAAGATGCTGGTTTTCCAGAATACGTGATGCAAGAAATTACAAAAGCTGGGTTTACTGAGCCTACACCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTCATAGGAATAGCTGAAACAGGTTCAGGGAAGACACTTGCGTACTTATTACCTGCCATTGTGCACGTTAATGCTCAGCCGATCCTAGATCCTGGAGATGGACCTATTGTGTTAGTATTGGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAGGCTACTAAATTTGGTGCTTCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAAGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCCACTCCCGGAAGATTAATTGATATGCTCGAATCAAATCATACCAACTTACAGAGGGTCACATATCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTGCGGAAGATTGTTTCTCAGCTAGTAGAGATAATAACAGAAAAAGGAAGAAAAACTGAAGGAGACACTAGAGTGGGTAAAAGTGGTGGAACAATATCGGCTACTTCCTTCCCTTTTTGTCGGGGTTTTGAAACCGTACCTAAAAAAGATAGAGCTCCTGATATGCATTGCAGGACCTTGATCCGACCGGACCGTCAAACTTTGTATTGGAGTGCTACTTGGCCAAAGGAGGTTGAACAATTGGCACGGAAGTTCCTTTACAACCCATACAAAGTAATTATAGGGTCTGAAGATTTGAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAAAAAGGATGTGATCAGATCACTAGGCAACTCCGCATGGATGGCTGGCCTGCACTTTCCATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAATCAGGAAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGGGGTTTAGTTAGAATTACCCATCTGCTGCTTGAGGTCAATTCCAGAGTAGTCCGTCTTGGCATTTTTATTGTGGCAAATAGCGAAGAGCTGCTTTTGTATGTGAAGGATGTAAAGTATGTAATAAATTATGACTTTCCGGGGTCACTTGAGGACTATGTCCATCGCATTGGGCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCCTACACATTCTTCACGGCTGCTAATGCTAGATTTGCAAAGGAACTAATCGCTATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGCCGTGGTGCACCACCTCTGCCTTCAGTTTTGCCTGGGGTTTGCTTTGTTACGGTTTTGGTGTATTTGATTCCTCTCGATGGCAGTCTTCTATTGAGCTCTTTTTGGATGGTTTTCTGTCAGTTTTATGATGTTCTGCCAACGGATTCCTCATCCTTTACACTCGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGATTCATGA	1917	0.4491	MSRYDSRSGDPTSYRDRRSDSGLGAPTGFGGSVQHSSSNRRDHDDGGSPKRNLSLDGLPHFEKNFYIESPAVRAMTDAEVNEYRQQREITVEGRDIPKPVKTFQDAGFPEYVMQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQLVEIITEKGRKTEGDTRVGKSGGTISATSFPFCRGFETVPKKDRAPDMHCRTLIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSEDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLVRITHLLLEVNSRVVRLGIFIVANSEELLLYVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPLPSVLPGVCFVTVLVYLIPLDGSLLLSSFWMVFCQFYDVLPTDSSSFTLVPEVSKTVGGVMAVLVHGADS	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian9g00256	638	Pfam	DEAD/DEAH box helicase	125	349	IPR011545	GO:0003676\|GO:0005524
	Vian9g00256	638	CDD	SF2_C_DEAD	373	533	-	-
	Vian9g00256	638	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	253	261	IPR000629	-
	Vian9g00256	638	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	132	360	IPR014001	-
	Vian9g00256	638	MobiDBLite	consensus disorder prediction	1	17	-	-
	Vian9g00256	638	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	80	562	-	-
	Vian9g00256	638	Pfam	Helicase conserved C-terminal domain	385	524	IPR001650	-
	Vian9g00256	638	SMART	ultradead3	120	376	IPR014001	-
	Vian9g00256	638	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	371	557	IPR027417	-
	Vian9g00256	638	SMART	helicmild6	413	524	IPR001650	-
	Vian9g00256	638	MobiDBLite	consensus disorder prediction	1	56	-	-
	Vian9g00256	638	FunFam	probable ATP-dependent RNA helicase DDX17	63	279	-	-
	Vian9g00256	638	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	388	563	IPR001650	-
	Vian9g00256	638	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	101	129	IPR014014	GO:0003724
	Vian9g00256	638	Gene3D	-	64	361	IPR027417	-
	Vian9g00256	638	CDD	DEADc_DDX5_DDX17	112	360	-	-
	Vian9g00256	638	Gene3D	-	362	564	IPR027417	-
	Vian9g00256	638	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	84	362	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian9g00256	Vian-Chr9	2284885	2292307	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian9g00256	88	544	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.729	1.27e-58	201

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian9g00256	K12823		-	gmx:100790464	909.442