Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00249 ATGGCTAACCACCTCAGCTGGTTAGCATGCGTTGTACGAGGATTTGTTTGGACTTCTTTAGCAGTTTCATTGCTTGTTCAGGGACACAAATGGATCAAAGTTCTAAACTCTGTCTGGTGGGCATGTTCCTTTGCACTAGTTTCGGCTCTCCACATTGAAATTCTTTTTAGAAAGCATGCAATAGAAATTTTCGATGTCCTACTATGGCTCTTACACACGCTTCTTCTCTTCTGTGCCTTCCAAAACCTTGGTTGCTTTGTCATTCAAAATGTGCCAAAAAGTTTATCTGAACCGTTGTTAGCTCGGGAAGTTGACTCGGAAGAAACAGGACTAGGTCGTGCTTCCTTTCTGAGCAAGTTGACTTTCTCTTGGGTTAACTCCTTACTCAGTTTGGGTTACTCAAGGCCTCTATCTCTTGAAGACATCCCTTCCATTCTTTCTGAAGATAAGGCACACCTGTCCCACCAAAACTTCATGCATGCATGGCAATCCCTAGCGAGGGAGAGAAGCAAGAATAACACCAAGAACTTGGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACATATTAATATCTGTTTACGCATTGCTCAGAACCATTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCAAATCGTAGGGATTCCGGGGAGACAGATCTCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGATTCTGTGTCACAGAGACACTGGTTTTTTTGTACCAGGAGGTCGGGGTTGAAGATGAGATCAGCTCTGATGGTTGCAGTGTATGAAAAACAACTAAAGCTTTCAAACTCAGCAAGGACAAGACACTCGACAGGTGAAATTGTGAATTACATTGCTGTTGATGCATATCGCATGGGAGAATTTCCATGGTGGTTTCATCTAACATGGGCATGTACATTGCATCTTCTTCTATCTATCAGTATCCTGTATGGAGTTGTGGGAGTAGGTGCACTTCCTGGTTTAATTCCTCTTCTTATATGTGGACTTCTCAATGTACCATTTGCCAAGATCCTACAAAAGTGCATGGCACAGTTCATGATTTCACAGGATGAGCGTCTGAGAGCAACTACAGAAATTCTAAATAGCATGAAAATCATCAAGTTACAGTCCTGGGAAGACAAATTCAAGAGTTTGGTTGAGAACCTACGTGGGAAAGAGTTCATTTGGCTATCTAAGGCACAGATGTTGAAAGCTTATGGGTCACTTGTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCCTCGGTTGTGCTGTTTTCAATAGTGATCCATTAAATGCCGGGACCATATTTACAGTTCTTGCAACGTTGAGGAACTTGGGAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTGTTTTGATCCAAGTTAAGGTATCTTTTGATCGTCTCAATACCTTTTTGTTTGATGAAGAACTAGATACCAGTGATGGTAACGGAAGCTATATAAACCGAAGTTACATTAATGCGGTAGAAATCCAAGCTGGAAACTTCATTTGGGACCATGAATCAGTGTCCCCAACTTTAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAGTGTTAGGAGAGATTCCCAAGATCTCAGGAACTGTCAATGTGTTCGGCAACATAGCATATGTTTCTCAAACTTCTTGGATACAAAGTGGGACGGTTCGAGAGAATATACTATTCGGCAAGCCAATGGAGAAAACAAGATACGAGAATGCCATTAGAGTTTGTGCCTTGGATAAGGATATCAATGATTTTAGTCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTTGCTCGTGCTGTCTACAATGATGCTGACATTTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGCGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTGAATCAGGAAAGTATGAGAATCTCTTAACAACTGGGACTGCCTTTGAACAACTTGTGAGCGCTCACAAGGAAGCAATTACAGAGTTGGATCAGAATAATGAGAACCGAATTCATAGAGAAGAGTCTCAAGGTGTTTATAAATACCAAAGTGAGGGGGAGATTTCTACGGAGGGTCAACTTGGGATGCAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTCGGCTTCAAGACATTCTGGGATTATATTTCCTTTTCCAGGGGTTCATTGATGCTGTTTTATATAGTTTTGGCACAATGTGCTTTTGTTGCTTTGCAGACTGCATCAACGGTTTGGCTTGCTTTAGCCATTGATATTCCAAAAATAACTAGTGCCATCTTGATTGGGGTGTACGCATTAATTTCATTTTCTGGTGCTGCGTTTACATATATAAGGTCTCTCTTGACCTCTTACCTTGGATTAAATGCTTCCAAAGCTCTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCCATAGGAAGGATTTTAACAAGAGCTTCATCAGATTTAAGTATTTTGGATTTTGACATACCTTATTCGATCACCTTTGTAACATGTATACCAATTGAAATTTTGGTGATTATTGGTCTAATGGTTTTAGTAACATGGCCAGTTCTCATTGCTGCCATTCCAGCAATAGTTGCGTCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAAGGGAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAGCTGAAACATCACTTGGTGTTGTTACTGTGAGAGCATTCGATATGGTAGAAAGATTTTTTAAAAACTACTTAAAGCTTGTAGACACAGACGCAACACTGTTTTTTCATTCTAATGTGGCCACGGAATGGTTACTTTTGAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCAGGTCTTGTGGGACTATCTCTCTCTTACGCATTATCCTTGACGTCATCATATAGATTTTGGACTCGAATGCATTGCAACTTTTTAAACTATCTTATCTCTGTTGAAAGAATCAAGCAATTCATTCACCTACCATCAGAACCTCCTGCTATTTTGAAGGACCACCAACCTCCATCTTCATGGCCATCCAAGGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCGAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACCGGAAGTGGAAAGAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGACATTGTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTTTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTATTCAGATGATGAGATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTCTGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGGCAACTGTTTTGTCTTGGAAGAGTACTGCTTAAGAGGAACAGAGTTCTTGTTCTGGATGAAGCCACTGCCTCCATTGACTCTGCCACAGATGCAATTCTACAAAGAATTATCAGACAAGAGTTTGAAGCATGCACAGTTATTACAGTGGCTCACAGGGTTCCCACTGTTATAGACAGTGATATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTCGAGACTAATGGATACCGACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAATAATTCCTCCTAA 4092 0.4118 MANHLSWLACVVRGFVWTSLAVSLLVQGHKWIKVLNSVWWACSFALVSALHIEILFRKHAIEIFDVLLWLLHTLLLFCAFQNLGCFVIQNVPKSLSEPLLAREVDSEETGLGRASFLSKLTFSWVNSLLSLGYSRPLSLEDIPSILSEDKAHLSHQNFMHAWQSLARERSKNNTKNLVFWSIVRTHLKENILISVYALLRTIAVTVSPLILYAFVNFSNRRDSGETDLREGLTIVGFLILSKVVDSVSQRHWFFCTRRSGLKMRSALMVAVYEKQLKLSNSARTRHSTGEIVNYIAVDAYRMGEFPWWFHLTWACTLHLLLSISILYGVVGVGALPGLIPLLICGLLNVPFAKILQKCMAQFMISQDERLRATTEILNSMKIIKLQSWEDKFKSLVENLRGKEFIWLSKAQMLKAYGSLVYWMSPTIVSAVVFLGCAVFNSDPLNAGTIFTVLATLRNLGEPVRMIPEALSVLIQVKVSFDRLNTFLFDEELDTSDGNGSYINRSYINAVEIQAGNFIWDHESVSPTLRDVNLEIKWGQKVAVCGPVGAGKSSLLYAVLGEIPKISGTVNVFGNIAYVSQTSWIQSGTVRENILFGKPMEKTRYENAIRVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTESGKYENLLTTGTAFEQLVSAHKEAITELDQNNENRIHREESQGVYKYQSEGEISTEGQLGMQLTQEEEKEIGDVGFKTFWDYISFSRGSLMLFYIVLAQCAFVALQTASTVWLALAIDIPKITSAILIGVYALISFSGAAFTYIRSLLTSYLGLNASKALFTSFNTAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPYSITFVTCIPIEILVIIGLMVLVTWPVLIAAIPAIVASKYVQEYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRAFDMVERFFKNYLKLVDTDATLFFHSNVATEWLLLRIEALQNLTVITSALLLVLFPQGYVSSGLVGLSLSYALSLTSSYRFWTRMHCNFLNYLISVERIKQFIHLPSEPPAILKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDIVIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSLVSDEGGNWSLGQRQLFCLGRVLLKRNRVLVLDEATASIDSATDAILQRIIRQEFEACTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTDSSFSKLVAEYWASCSNNSS 1363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00249 1363 Gene3D ABC transporter type 1, transmembrane domain 163 487 IPR036640 GO:0005524|GO:0016020
Vian9g00249 1363 Gene3D ABC transporter type 1, transmembrane domain 771 1100 IPR036640 GO:0005524|GO:0016020
Vian9g00249 1363 FunFam ABC transporter C family member 10 174 491 - -
Vian9g00249 1363 FunFam ABC transporter C family member 3 1102 1353 - -
Vian9g00249 1363 SUPERFAMILY ABC transporter transmembrane region 801 1101 IPR036640 GO:0005524|GO:0016020
Vian9g00249 1363 ProSitePatterns ABC transporters family signature. 635 649 IPR017871 GO:0005524|GO:0016887
Vian9g00249 1363 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 808 1069 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g00249 1363 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 191 475 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g00249 1363 CDD ABC_6TM_ABCC_D2 801 1094 IPR044726 GO:0140359
Vian9g00249 1363 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 113 1355 - -
Vian9g00249 1363 SMART AAA_5 1145 1330 IPR003593 GO:0016887
Vian9g00249 1363 SMART AAA_5 537 710 IPR003593 GO:0016887
Vian9g00249 1363 CDD ABCC_MRP_domain2 1117 1337 - -
Vian9g00249 1363 Pfam ABC transporter transmembrane region 193 454 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g00249 1363 Pfam ABC transporter transmembrane region 808 1066 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g00249 1363 CDD ABCC_MRP_domain1 510 710 - -
Vian9g00249 1363 CDD ABC_6TM_ABCC_D1 192 483 IPR044746 GO:0140359
Vian9g00249 1363 Pfam ABC transporter 528 662 IPR003439 GO:0005524
Vian9g00249 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 732 IPR027417 -
Vian9g00249 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1109 1352 IPR027417 -
Vian9g00249 1363 Gene3D - 488 759 IPR027417 -
Vian9g00249 1363 FunFam Multidrug resistance protein associated1 488 753 - -
Vian9g00249 1363 Pfam ABC transporter 1136 1284 IPR003439 GO:0005524
Vian9g00249 1363 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1121 1353 IPR003439 GO:0005524
Vian9g00249 1363 SUPERFAMILY ABC transporter transmembrane region 179 489 IPR036640 GO:0005524|GO:0016020
Vian9g00249 1363 Gene3D - 1103 1353 IPR027417 -
Vian9g00249 1363 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 512 733 IPR003439 GO:0005524
Vian9g00249 1363 FunFam ABC transporter C family member 5 769 1100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00249 Vian-Chr9 2215771 2220979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00249 510 739 Calmodulin-binding Proteins AT2G36910 27.600 2.36e-21 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00249 - - gmx:100784827 2232.99