Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00247 ATGATTGGTGTAATGGTTTTAGTGACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATAGTTGCATCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAAGGCAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAGCTGAAACATCACTTGGTGTTGTTACTGTGAGAGCATTCGATATGGTAGAAAGATTTTTTAAAAACTACTTAAAGCTTGTAGACACAGACGCAACACTGTTTTTTCATTCTAATGTGGCCACGGAATGGTTACTTTTGAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCAGGTCTTGTGGGACTATCTCTCTCTTACGCACTATCCTTGACGTCATCACATATATTTTGGACTCGAATGTATTGCAACTTATTAAACTATCTTATCTCTGTTGAAAGAATCAAGCAATTCGTTCACCTACCGTCAGAGCCTCCTGCTATTGTGAAGGACCACCAACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGACCTAATTCTCCATTAGTGCTTAAGGGTATCACTTGCACGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACCGGAAGTGGAAAGAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGACATTCTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTTTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTATTCAGATGATGAGATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTCAGGGTGAGTAA 969 0.4128 MIGVMVLVTWPVLIVAIPAIVASKYVQEYYQASSRQLMRINGTTKAPVMNFAAETSLGVVTVRAFDMVERFFKNYLKLVDTDATLFFHSNVATEWLLLRIEALQNLTVITSALLLVLFPQGYVSSGLVGLSLSYALSLTSSHIFWTRMYCNLLNYLISVERIKQFVHLPSEPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNSPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSQGE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00247 322 FunFam ATP binding cassette subfamily C member 11 176 308 - -
Vian9g00247 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 318 IPR027417 -
Vian9g00247 322 Gene3D ABC transporter type 1, transmembrane domain 1 172 IPR036640 GO:0005524|GO:0016020
Vian9g00247 322 SUPERFAMILY ABC transporter transmembrane region 2 173 IPR036640 GO:0005524|GO:0016020
Vian9g00247 322 Gene3D - 174 322 IPR027417 -
Vian9g00247 322 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 308 - -
Vian9g00247 322 Pfam ABC transporter transmembrane region 2 138 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g00247 322 Pfam ABC transporter 208 309 IPR003439 GO:0005524
Vian9g00247 322 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 141 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00247 Vian-Chr9 2075844 2077202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00247 178 320 Calmodulin-binding Proteins AT2G36910 32.051 1.42e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00247 - - pvu:PHAVU_010G1404000 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00247 9 2075844 2077202 Vian9g00247 9 2075844 2077202 ECH