Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00236 ATGCAAGATCCGACAGCATTTCAAGGTTTGAAGCACCCTCAGTTTCCCGAACAAGAACAACTCAAATGCCCGCGTTGTGACTCCACGAACACCAAATTCTGTTACTACAACAACTACAACCTCTCTCAGCCGCGTCACTTTTGCAAGAACTGCAGAAGGTACTGGACAAAGGGTGGTGCTTTGAGAAACATCCCTGTCGGGGGTGGAAGCAGAAAGAGCATAAAACGTTCGTCAACCTCAAAACGCTCCTCTGCGCCGGCTTCCTCTGCGGTTTCTGAGGCTGACCCGACCCGGATTTGCACCAACCCGGTCGAGCAAGACAGTAGGGCGCTCAACATTGGTGGCACCTTTAGTTCCCTGTTGGCTTCATCTGGCCACTTTGGAACCCTCTTGGATGGTCTGAATCCAACTGGGTCAGGTCTCAAAATGGGTGAATTTGGGCAGGATGTGAGTTCTGACCTGGGTTTGAATTCGGATTCGGGTTCAAACCCGGGTTTGCAGCTTCAGAGTAATGGGAGTTCGGAGGGTTTTCTGGGTATGCAGAATGGGGAATCAACCTGTTGGAATGGTGGCCATGGTTGGTCTGATCTTGCAATATACACACCTCGCCCGAGTTTTCAATAG 624 0.508 MQDPTAFQGLKHPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSIKRSSTSKRSSAPASSAVSEADPTRICTNPVEQDSRALNIGGTFSSLLASSGHFGTLLDGLNPTGSGLKMGEFGQDVSSDLGLNSDSGSNPGLQLQSNGSSEGFLGMQNGESTCWNGGHGWSDLAIYTPRPSFQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00236 207 MobiDBLite consensus disorder prediction 152 177 - -
Vian9g00236 207 MobiDBLite consensus disorder prediction 79 98 - -
Vian9g00236 207 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Vian9g00236 207 Pfam Dof domain, zinc finger 19 73 IPR003851 GO:0003677|GO:0006355
Vian9g00236 207 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Vian9g00236 207 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 148 IPR045174 GO:0003700|GO:0006355
Vian9g00236 207 MobiDBLite consensus disorder prediction 65 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00236 Vian-Chr9 1974266 1974889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00236 12 131 C2C2-Dof Transcription Factor Family AT1G51700 55.714 1.63e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian9g00236 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00236 - - gmx:100790822 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00236 9 1974266 1974889 Vian9g00236 9 1974266 1974889 ECH
Vian11g00219 11 2153780 2154397 Vian9g00236 9 1974266 1974889 PCT