Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00235 ATGGATGGTTTGAGTTGGGATACCTCTCAACTTGAAGCAAACACACCAATCCTGTGGAGTACTATTCAGCCACCACCAGATTTTGAAGGAGGCTACTCCATGCCCAATGTTGTCAATCAAATACAAGATTTGCAGAAAGCTCAAACAGGTCTTGCACATTCAGATTCTGAAAGAGTGATTTATCAGTCAGCAGATGCTACCACCGCTTCTTCAGAGATAATGGATGTGATGCAAAGGCAAAACACAAATCTTTTACAGCATGCACCAACAATGATGCCGGTGAAATCAGGAACTGGAGCCAGTTGGGGAGAAGCTTTCACATCTCAATCATACCCGTCTCTGTCGGTCAATGGACCTCAAAGGATGAACCTGATTAGCAACTACATGCCAGATTTCAGCATGGCCCACCAACAACAGCAGCAGCAACAACTTGTCAATGGCTCACAAAATGGAAAGGGTGCTTGCTCTCTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAATAGCAGCACAGACACATCTGTTGAAGATGATAGCATCTCGATGATTTTATCTGACTGTAGAAACTTGTGGAACTTCAGCTACGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCATCGAATGGTAGAAAGGAAGACAAGAGGTGTCCGGTGAAGGAAGTTGATGAAACAGTTTCTCAAAGCTCCTTGGATCGAGGAAAAACAGTACAATCAAAGGCTAATTGTTCAAAGAGGAGCCATGAGGAAACTGGAATGATCAAAGTTGGTGCCACTGGCAGTGGTTCCTGCTTCAGTATTGTGCAGAATTCTTCTTCTGTTGAGGAAGGTGGATTCAGACTGATCTCAGATGATCCATCAAAAAGCAAGAAACCCAGATGGGAGAAGAGTTCCTCTTCAAATAACATCAATTTCCAGCAACCGAATTCATCCATGTCTTCATCCATTGAGGAACCTGATCCAGAGGCCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGATGCTGCTGAAAAACCAAAGAGGAAGAATGTGAGAATATCAACTGATCCACAAACTGTGGCTGCAAGGCACAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGAGGAAGCAAAATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTTAAGGCACTGGAATGTCTAGGAAACAAAGTTGAAGCAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACATCTCTCAGTCAAATCCATCATTCCCAGGGTTGA 1362 0.4405 MDGLSWDTSQLEANTPILWSTIQPPPDFEGGYSMPNVVNQIQDLQKAQTGLAHSDSERVIYQSADATTASSEIMDVMQRQNTNLLQHAPTMMPVKSGTGASWGEAFTSQSYPSLSVNGPQRMNLISNYMPDFSMAHQQQQQQQLVNGSQNGKGACSLESFDCLISATNSSTDTSVEDDSISMILSDCRNLWNFSYGSAASTGESESNASNGRKEDKRCPVKEVDETVSQSSLDRGKTVQSKANCSKRSHEETGMIKVGATGSGSCFSIVQNSSSVEEGGFRLISDDPSKSKKPRWEKSSSSNNINFQQPNSSMSSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLDAAEKPKRKNVRISTDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKVEAMNCPPTSIAFSFNPSFPMQTSLSQIHHSQG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00235 453 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 167 448 IPR045843 GO:0003700|GO:0006355
Vian9g00235 453 MobiDBLite consensus disorder prediction 278 320 - -
Vian9g00235 453 MobiDBLite consensus disorder prediction 208 229 - -
Vian9g00235 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 358 407 IPR011598 GO:0046983
Vian9g00235 453 SMART finulus 364 413 IPR011598 GO:0046983
Vian9g00235 453 MobiDBLite consensus disorder prediction 282 296 - -
Vian9g00235 453 MobiDBLite consensus disorder prediction 297 318 - -
Vian9g00235 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 417 IPR036638 GO:0046983
Vian9g00235 453 MobiDBLite consensus disorder prediction 200 250 - -
Vian9g00235 453 Pfam Helix-loop-helix DNA-binding domain 368 407 IPR011598 GO:0046983
Vian9g00235 453 Gene3D - 363 425 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00235 Vian-Chr9 1962683 1964044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00235 97 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.518 5.02e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00235 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00235 - - vra:106773034 851.277