Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00229 ATGGCGACTGTTCCAGGGCAACTTGTGTGGGAGATCGTGAAGAAGAACAACTCTTTCTTAGTGAAACAGTTCGGAAGAGGGACTCAGAGCGTCGAATTCAGCAGAGAGTCCAACAATCTCTACAACCTCAATTCGTTCAAATTCTCTGGTTTGGCAAACAAGAAAACTGTTACCGTTCAGCCTGCTGGTAAGGATCTATCTGTTTTGTTGGCTACAACAAAGACAAAGAAGCAGAACAAGCCTGCTTCATTGCTCCACAAATCTGTGATGAAGAAGGAGTTCCGTAGGATGGCAAAGGCTGTTGAAAATCAGGTTGCGGATAATTACTACAGGCCTGATCTTAAGAAGGCCGCCCTTGCAAGGTTGAGTGCTGTTAACAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAACAGACAGGCCGTGAAGATCTCTGGTAGGAAGTGA 453 0.4592 MATVPGQLVWEIVKKNNSFLVKQFGRGTQSVEFSRESNNLYNLNSFKFSGLANKKTVTVQPAGKDLSVLLATTKTKKQNKPASLLHKSVMKKEFRRMAKAVENQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKISGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00229 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vian9g00229 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Vian9g00229 150 FunFam 60S ribosomal protein L28 5 133 - -
Vian9g00229 150 Gene3D - 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00229 Vian-Chr9 1895561 1897470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00229 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 73.427 8.01e-76 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00229 K02903 - gmx:100499921 275.789