Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00222 ATGGAAAGCAATGGTGAAGCAGAAAACAGTTGTGGAAAAGTTTGTTCTCCATCATCAGAAAAGCCATCACTGATGCTGATGAAGAAGAAGAACAAGAAGAAGAAGCTTTGTTGCAGATATTGTAACAAGAAGTTCAGCAGTTTCCAAGCCTTGGGTGGACATCAGAATGCACACAAGGCAGAAAGAGCAGTAGCACAGAGAGAGAAGATTCTGAACATGGCTTCTGCATATGGCAGAACTTCATATGTTGGTGGTGTTGATTCAAACAACTGTCATGGATTGAGAGGAAAATCATGTGGGGTGTCAGAAATTTCCATGACTCATTTCAAGCCACATTTTGGACTAACACATGATCATCAATGGTCAAAGCAGTACACTTTGGATTATGTTCAAGCCACAATTCAAAAGTTGCAGACTTTGAATGATGAAGGGAGTGGATTTCATCAAGATCACATATCATATCAACCTTTAACTTTTTCTATACTTGGAGATGAAAAACTAAATTCAGAGTTGTTGTTTAATACTAGTTTATCTAATCAAGAAAAAGATTCTGCAGTGATATCTCGTAATGAAATTACAATGATGCATGATTTGAATGTCAAGAATTCAAGTGGTGATGAGAACTCTGATGAAGAAAATGGTTTTTCTGCAATGGCTGCTGGCAATGCAGTGGTGGAGGAACTTGATTTGACTCTCAAGATTGCCAATAGAGTGGTGGAGGAACCTGATTTGACTCTCAAGATTTGA 747 0.3815 MESNGEAENSCGKVCSPSSEKPSLMLMKKKNKKKKLCCRYCNKKFSSFQALGGHQNAHKAERAVAQREKILNMASAYGRTSYVGGVDSNNCHGLRGKSCGVSEISMTHFKPHFGLTHDHQWSKQYTLDYVQATIQKLQTLNDEGSGFHQDHISYQPLTFSILGDEKLNSELLFNTSLSNQEKDSAVISRNEITMMHDLNVKNSSGDENSDEENGFSAMAAGNAVVEELDLTLKIANRVVEEPDLTLKI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00222 248 MobiDBLite consensus disorder prediction 1 20 - -
Vian9g00222 248 MobiDBLite consensus disorder prediction 1 17 - -
Vian9g00222 248 Pfam C2H2-type zinc finger 37 60 - -
Vian9g00222 248 Gene3D Classic Zinc Finger 16 83 - -
Vian9g00222 248 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Vian9g00222 248 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
Vian9g00222 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vian9g00222 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 233 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00222 Vian-Chr9 1818276 1819022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00222 32 111 C2H2 Transcription Factor Family AT5G10970 40.741 1.08e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian9g00222 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00222 - - vum:124829785 473.011