Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00201 ATGTGGCAAAGAAGCCACGGGTCTTCGGAGGAGAGGAAACTGGAGCTCAGGCTTGGTCCACCTAGTGAAGATTCTCTCAATGAAAGCATCAAAAAATGCATCACAGAAAGAAACGAATCACCACTTTCTCTTGGTTACTTCTCAACTCACGAAATTTCCGCTTCTGACAAACCAGGTCCAGGTGGGGCTATGGTGCCCACTGCATGGAGTTCCGCATCTTACCACCAACACCAAGCTAAACCATCATATTTTCAACTCCAATCAAGGCCACAAAACGTGTTAATGATGAGAAAGGAAGTGCCACAACTTTGTTGTGTAGAGAACAAGACATTCTCACCCTCTTCTGCAGAAGCAGCCGTGTCCACAAGATTTTTCACTGTTCATGTTGCTAAACCTTTTGCATATGGACCCACCAAAAGCAGAACTGCTTCGGGTGCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCAAAGCTGCATACTGGGTCCCAACAATATCAACATTTTGTTCCAGACAACGTTGCTAGCCAAAAACCTACTCACAACTGTGGCAAAGGCTTGTTTGTAAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGGTGTTGATGAGCTCTTTAGAGGCCTACTTGCAGAGATGAAGTTGTCTCATATTGCCTCTTCCCACTGTTGTTCTGCACAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGGAGAGGAAGAGAAAGAGAAAGCCAATACAAGTTTTCTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAAATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCCACAGTGAAGAGGCTGAGGGTGTTGAAAAGTTCTGATCTTCCTGCATTTACACGTAAGTTGGACTCTTTTAACTTGATTGAGAAGAACTGGTTCTTCTGA 1014 0.4349 MWQRSHGSSEERKLELRLGPPSEDSLNESIKKCITERNESPLSLGYFSTHEISASDKPGPGGAMVPTAWSSASYHQHQAKPSYFQLQSRPQNVLMMRKEVPQLCCVENKTFSPSSAEAAVSTRFFTVHVAKPFAYGPTKSRTASGAVVGWPPIRSFRKNIASGSSSKLHTGSQQYQHFVPDNVASQKPTHNCGKGLFVKINMDGVPIGRKLNINAYDSYEKLSSGVDELFRGLLAEMKLSHIASSHCCSAQRDSCAGGIQNKGEEEKEKANTSFLVGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTRKLDSFNLIEKNWFF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00201 337 MobiDBLite consensus disorder prediction 1 26 - -
Vian9g00201 337 Gene3D - 190 327 - -
Vian9g00201 337 FunFam Auxin-responsive protein 190 325 - -
Vian9g00201 337 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 317 IPR003311 GO:0005634|GO:0006355
Vian9g00201 337 SUPERFAMILY CAD & PB1 domains 188 312 - -
Vian9g00201 337 ProSiteProfiles PB1 domain profile. 195 315 IPR000270 GO:0005515
Vian9g00201 337 MobiDBLite consensus disorder prediction 1 19 - -
Vian9g00201 337 Pfam AUX/IAA family 14 319 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00201 Vian-Chr9 1655200 1657258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00201 198 325 B3 DNA Binding Superfamily AT3G61830 23.438 6.07e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian9g00201 AUX_IAA 4.7e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00201 K14484 - gmx:100793822 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00201 9 1655200 1657258 Vian11g00201 11 1843960 1846508 ECH
Vian9g00201 9 1655200 1657258 Vian9g00201 9 1655200 1657258 ECH
Vian11g00201 11 1843960 1846508 Vian9g00201 9 1655200 1657258 PCT