Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00197 ATGTTCTCCTCCAATGCATGCTCCATCATGTGCAAGTCGGGCGTAGGTGGGTGGTCTTCGTGCAGTAACTTCTCTGCTTCACAGAGGAGGCGTTCTGCTCCATCGATAGTGACGTGTTGCGCTCCAACTTCGAGCAGCGGCAAAACTCACGGCGGCTTCGTGATGGCTAAAGAGGCAAATGGGACTCCCACGGCGGTCGGCGAAACCCCAATCGCTGGCGGTGGCGTCCGGGATGTGTACGGCGAGGATAAGGCCACGGAGGATCAGTGTGTGACTCCATGGAGTGTCTCTGTTTCCAGTGGGTATACTTTGATGAGAGATCCACACTTCAACAAGGGTCTCGCCTTCACTGAAGAAGAGAGGGACGCACACTTCTTGCGTGGCCTTCTTCCCCCTTCTGTTATTTCTCAAGAAACTCAGGTAAAAAAAATGATCCAACACATACGCCAGTATCAAGTTCCATTGCAGAAGTACGTGGCAATGATGGATCTTCAGGGGAGAAATGAAAGATTGTTCTACAAGCTTCTGCTTGATCATGTTGAGGAGTTACTACCAGTTGTCTATACTCCAACAGTTGGTGAAGCATGCCAAAAATATGGGAGTATCTTCATGCATCCTCAGGGAGTTTATATAAGTTTGAAGGAGAAAGGGAGGATTCTTGAAGTTCTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAGAGAATTCTGGGTCTTGGGGATCTTGGCTGTCAGGGAATGGGAATACCGGTAGGAAAACTTTCTCTATATTCAGCACTTGGTGGAGTTCGTCCTTCTGCATGCTTACCTATTACCATCGATGTTGGTACAAACAATGAGAAGTTGTTGAATGAAGAATTATATATAGGGCTCAAGCATAAACGAGCAACTGGGCAGGAATATGCTGAACTTCTGCATGAGTTTATGAATGCAGTCAAGCAGATTTATGGTGAAAAAGTCCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGCTCTACTTGAAAAATATAGGTCAACACATCTTGTCTTCAATGATGATATTCAGGGAACAGCATCAGTTGTTCTTGCAGGAGTAGTTTCAGCTCTGAAATTGGTTGGGGGAAACTTGACTGATCACAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCCTAGCACTTGAAACTTCAAAACGGACAAATGTCCCAGTAGAAGAATTGCGCAAGAACATTTGGTTGGTGGACTCACAGGGTTTGATTGTGAAATCCCGCAAAGACTCACTTCAACATTTCAAGAGACCCTGGGCTCATGAACATGAACCTGTTAAGAAACTTGTCGATGCTATTAACAAAATTAAACCAACGGTTTTAATCGGAACATCAGGACAAGGGAGAGCTTTTACCAAGGAAGTGATTGAAGCTATGGCTTCCATCAATGAGAAACCTATTATTCTTTCCCTTTCCAACCCAACATCACAGTCAGAATGCACTGCTGAAGAAGCTTACACTTGGAGCGAGGGACGTGCCATTTTTGCTAGTGGGAGCCCTTTTGATCCTGTTGAATATGGTGGAAAAGTTTTTGTGCCTGGCCAGGCCAATAATGCATACATTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGAACCATTCGTGTGCATGATGACCTTCTTCTGGCAGCTGCTGAAGCTTTGGCTTCACAGGTGACTCAAGAGGACTATAATAAGGGGCTCATATACCCTCCATTCAGAAACATCAGAAAGATTTCAGCACACATTGCAGCCAAGGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTAACCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAACTCTATGTATACACCAGCCTATAGAAACTACCTGTGA 1923 0.4498 MFSSNACSIMCKSGVGGWSSCSNFSASQRRRSAPSIVTCCAPTSSSGKTHGGFVMAKEANGTPTAVGETPIAGGGVRDVYGEDKATEDQCVTPWSVSVSSGYTLMRDPHFNKGLAFTEEERDAHFLRGLLPPSVISQETQVKKMIQHIRQYQVPLQKYVAMMDLQGRNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMHPQGVYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPITIDVGTNNEKLLNEELYIGLKHKRATGQEYAELLHEFMNAVKQIYGEKVLVQFEDFANHNAFALLEKYRSTHLVFNDDIQGTASVVLAGVVSALKLVGGNLTDHRFLFLGAGEAGTGIAELLALETSKRTNVPVEELRKNIWLVDSQGLIVKSRKDSLQHFKRPWAHEHEPVKKLVDAINKIKPTVLIGTSGQGRAFTKEVIEAMASINEKPIILSLSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPVEYGGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAAAEALASQVTQEDYNKGLIYPPFRNIRKISAHIAAKVAAKAYELGLATNLPQPKDLVKFAENSMYTPAYRNYL 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00197 640 PIRSF ME 73 640 IPR001891 GO:0004470|GO:0004471
Vian9g00197 640 ProSitePatterns Malic enzymes signature. 352 368 IPR015884 GO:0004471
Vian9g00197 640 PRINTS Malic enzyme signature 383 399 IPR001891 GO:0004470|GO:0004471
Vian9g00197 640 PRINTS Malic enzyme signature 267 289 IPR001891 GO:0004470|GO:0004471
Vian9g00197 640 PRINTS Malic enzyme signature 352 368 IPR001891 GO:0004470|GO:0004471
Vian9g00197 640 PRINTS Malic enzyme signature 231 260 IPR001891 GO:0004470|GO:0004471
Vian9g00197 640 PRINTS Malic enzyme signature 171 195 IPR001891 GO:0004470|GO:0004471
Vian9g00197 640 PRINTS Malic enzyme signature 327 345 IPR001891 GO:0004470|GO:0004471
Vian9g00197 640 PRINTS Malic enzyme signature 486 502 IPR001891 GO:0004470|GO:0004471
Vian9g00197 640 Pfam Malic enzyme, NAD binding domain 356 608 IPR012302 GO:0051287
Vian9g00197 640 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 356 639 IPR036291 -
Vian9g00197 640 PANTHER MALIC ENZYME-RELATED 72 637 - -
Vian9g00197 640 Gene3D - 99 353 IPR037062 GO:0004471
Vian9g00197 640 FunFam Malic enzyme 99 353 - -
Vian9g00197 640 FunFam Malic enzyme 354 640 - -
Vian9g00197 640 CDD NAD_bind_1_malic_enz 356 634 - -
Vian9g00197 640 SMART Malic_M_2 356 609 IPR012302 GO:0051287
Vian9g00197 640 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 355 IPR046346 -
Vian9g00197 640 Pfam Malic enzyme, N-terminal domain 165 346 IPR012301 GO:0004471
Vian9g00197 640 Gene3D - 354 640 - -
Vian9g00197 640 SMART malic_2 165 346 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00197 Vian-Chr9 1613103 1617973 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00197 K00029 - gmx:100785718 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00197 9 1613103 1617973 Vian9g00197 9 1613103 1617973 ECH
Vian9g00197 9 1613103 1617973 Vian11g00194 11 1755639 1760479 ECH
Vian1g04015 1 63227338 63231900 Vian9g00197 9 1613103 1617973 ECH
Vian4g01790 4 34165389 34169466 Vian9g00197 9 1613103 1617973 ECH
Vian9g00197 9 1613103 1617973 Vian4g01790 4 34165389 34169466 ECH
Vian9g00197 9 1613103 1617973 Vian8g00993 8 26471242 26472716 ECH
Vian9g00197 9 1613103 1617973 Vian3g00672 3 6802957 6804139 ECH
Vian9g00197 9 1613103 1617973 Vian9g00621 9 7537144 7543473 ECH
Vian9g00197 9 1613103 1617973 Vian2g00567 2 6873673 6875255 ECH
Vian11g00194 11 1755639 1760479 Vian9g00197 9 1613103 1617973 PCT