Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00189 ATGGAAGGTGATGGGACATGTGACATGGGAAATTTTGAGGAGGAAATGGGATGTGACATGATGGGATGGAATGATCACACTAACGAGCTCCACCAGATCATTGCCTCGCTTGAAGCGGGTAGCATATTCACGCACATCTTTTACGACCCAACTAAACCCAGTATGAATGAGTGTTGTAATGTTATTTGCAAATGTCAAATACTCTCCTCAAACGATCCCCAATCTTTAGATAACGACCCAAGCAATGATGAAGGGACTCTCGGACACACCAAACGGATCTCCTGTCAAAACGCGCCGGAATACTTCGTCGGAGGCTATTTTGCGGCCGGAGGAGCTGACCAATTCACTCAGCAGGATAAGCGCCACGCTGACCAGAAAATCGGTGAGTCTTTCGCCATTGATGACCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGGTTTCTTTGACAATGTAGCCGGGAACTCCACTGACTCCTCCACCGTCACTGCTGTTGACAGCTGCAACTCCTCAATTTCGGGCAGCGACAACCGCTTCGCCGCAGCCATTGTCCCTCGCGGCTACGCCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTACGATGATATGGCGGAACTGGAATGGCTCTCGAACTTCGTTGAGGACTCGTTCTCCGCCGAGGAGGAGTTGAAAACGCTGCAGCTACTGTCCGGCGCAGCTGCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCAGAGTCCTCGTCCTCCACCGACACGCTGCCGCCGTTCGCTTCCGACGAAACCGCTCGAAACGCACCGTTTCTCCACACGGAGACGCCTCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACACGCCTGCTTCGCCTGGTGGCACCGGAGCAAGAGAGGCCGCCGCAGGCGAAGGATTCACCGGTGAAGAAGAGAGAGGGAACGAATGCAGAGTGTTCCGGAAGGAAATGCCTGCACTGCGGCGCGGAGAAGACGCCGCAATGGCGGACGGGACCGATGGGACCGAAGACGCTGTGCAACGCATGCGGCGCCGGCGGCGAGCCCGACATTCGTGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGATACATCGACAGCAGCATCAGCAATTGATGAGTCAGAGTTCAATTTTCGGCGTATCAAACGGTGGAGACGAGTTCTTGATCCATCATCATCATCACCATCAGCACTGTGGGCCAGATTTTAG 1281 0.5621 MEGDGTCDMGNFEEEMGCDMMGWNDHTNELHQIIASLEAGSIFTHIFYDPTKPSMNECCNVICKCQILSSNDPQSLDNDPSNDEGTLGHTKRISCQNAPEYFVGGYFAAGGADQFTQQDKRHADQKIGESFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFAAAIVPRGYAGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAASTAIGAKPQTPESSSSTDTLPPFASDETARNAPFLHTETPLPGKARSKRSRAAPGDWSTRLLRLVAPEQERPPQAKDSPVKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGAGGEPDIRVDEAFEFASEGFGAEAAEGDTSTAASAIDESEFNFRRIKRWRRVLDPSSSSPSALWARF 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00189 426 ProSiteProfiles GATA-type zinc finger domain profile. 327 359 IPR000679 GO:0006355|GO:0043565
Vian9g00189 426 SMART GATA_3 327 373 IPR000679 GO:0006355|GO:0043565
Vian9g00189 426 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 330 359 - -
Vian9g00189 426 Pfam GATA zinc finger 333 359 IPR000679 GO:0006355|GO:0043565
Vian9g00189 426 ProSitePatterns GATA-type zinc finger domain. 333 358 IPR000679 GO:0006355|GO:0043565
Vian9g00189 426 MobiDBLite consensus disorder prediction 244 262 - -
Vian9g00189 426 CDD ZnF_GATA 332 359 IPR000679 GO:0006355|GO:0043565
Vian9g00189 426 PANTHER GATA TRANSCRIPTION FACTOR 115 359 - -
Vian9g00189 426 Gene3D - 323 361 IPR013088 GO:0006355|GO:0008270
Vian9g00189 426 MobiDBLite consensus disorder prediction 241 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00189 Vian-Chr9 1521718 1530394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00189 129 360 C2C2-Gata Transcription Factor Family AT4G32890 42.975 3.76e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian9g00189 GATA 6e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00189 - - gmx:100776605 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00189 9 1521718 1530394 Vian9g00189 9 1521718 1530394 ECH