Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00185 ATGACACAAACAACAACCTCTTCTACGTTGTCGTCACCGTCCTCGCATTCGGGTCCAAAGGCTCATGCCCGGGCCAAGAGGCCCAGAGACTGCAGCAAGCACCCGGTGTACCACGGCGTACGGAAGCGCAATTGGGGCAAATGGGTCTCGGAAATCCGCGAACCGCGCAAGAAGTCTCGCATCTGGCTCGGAACCTTCGCCACCCCGGAAATGGCGGCGCGGGCCCATGACGTGGCGGCGCTCACCATCAAAGGCCAATCCGCAATCCTCAACTTCCCGGAAATCGCGGACCTGCTCCCCCGCCCCCTCACGTGCTCCCCACGCGACATTCAAGCCGCCGCCACCGCCGCCGCCTCCATGTCTAAATTCGACCCCGTAACACAAACCTCGGACTCGGAAACAGAAACTTCCGAAGAATCCGAACTGAGCGAGATAGTGGAGCTTCCGAACATCGAAGACAGCTTTGACTCGTCCGTTGACTCGTTCGTGATGGTCGACGTGGTGGACAGTTGGATGTTTCCGCCATTGGACTCGTTCTGCGCGGCCTTTTCCGATGAGTTGTTTCCGCAACAGTGTTGTTCTGAAACGCTATTACCCATTTGGGATTGA 609 0.5796 MTQTTTSSTLSSPSSHSGPKAHARAKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPLTCSPRDIQAAATAAASMSKFDPVTQTSDSETETSEESELSEIVELPNIEDSFDSSVDSFVMVDVVDSWMFPPLDSFCAAFSDELFPQQCCSETLLPIWD 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00185 202 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Vian9g00185 202 MobiDBLite consensus disorder prediction 1 37 - -
Vian9g00185 202 CDD AP2 37 94 IPR001471 GO:0003700|GO:0006355
Vian9g00185 202 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Vian9g00185 202 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Vian9g00185 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 154 - -
Vian9g00185 202 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Vian9g00185 202 MobiDBLite consensus disorder prediction 1 18 - -
Vian9g00185 202 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Vian9g00185 202 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Vian9g00185 202 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Vian9g00185 202 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Vian9g00185 202 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00185 Vian-Chr9 1496773 1497381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00185 20 175 AP2-EREBP Transcription Factor Family AT5G11590 54.749 5.75e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian9g00185 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00185 - K09286 gmx:100804056 285.419