Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00179 ATGTCTACACCCTTTGAACATGATTACATAGGCTTAGCAGAGACTCCATACATGGAGAAAAGCTGTGATAAGATATCCTCTTCAGTTTCGTCCAACCTTTCGTCTGAGGATGAGAACAGTTCATTTCTGAACTTCAAGGAGACGGAGCTGAGGCTTGGTCTGCCAGGTTGTGAGTTTTCTGAGAACAAACCAGGAGCTGCAGGGATCTCTCTTTTTGGCAAGGATTTGCAGAGTAGTGGCTATTCTGCTTCCTCAACTCCTTCCAAGAGCCTCAAGAGGGGTTTCTCTGATACCATTAGTTCCTCCTCCTCCTCTTCTGGGAAATGGATTTTCTCAGCCAGTGATGCAACTGGTGATGATTTGAGAAATGGGGCTAATACCTCTGCACTCTGCAGCAAAGAGGTTGGTTTGGTTCCTCACTCTGAGAAGCCGCCTCAGGTTTCTGCAACTGCAACAATTGAACATGCTCCTGCTCCTGCTGCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGGTCTTTTCGGAAGAACAGAATGGCCTATAATTTGGCAAAAAGCAACACTGAAGCTGAGGAGAAATCAAGAGCTGGTTGTCTTTATGTTAAGGTCAGCATGGATGGCGCACCTTATCTCAGAAAGGTTGATCTGAAAACCCACTGCAACTATATTGAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGTGGTTCACGTGGAGTTTCTGGTGGGAAAGAGGGATTGAGTGAGAGAGCGTTTAAGGATCTTATTGATGGCTCTGAATATGTTCTTACTTATGAAGATAAAGATGGAGATTGGATGCTAGTGGGTGATGTGCCTTGGGAGATGTTCACTGAGTCGTGTAAGAAACTAAGGATAATGAAAGGCTCCGAGGCAATTGGACTAGCTCCAAGGGCAATGGAAAAATCTAGGAGCCAATATTAG 960 0.449 MSTPFEHDYIGLAETPYMEKSCDKISSSVSSNLSSEDENSSFLNFKETELRLGLPGCEFSENKPGAAGISLFGKDLQSSGYSASSTPSKSLKRGFSDTISSSSSSSGKWIFSASDATGDDLRNGANTSALCSKEVGLVPHSEKPPQVSATATIEHAPAPAAKAQVVGWPPIRSFRKNRMAYNLAKSNTEAEEKSRAGCLYVKVSMDGAPYLRKVDLKTHCNYIELSSALEKMFSCFTIGQCGSRGVSGGKEGLSERAFKDLIDGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKKLRIMKGSEAIGLAPRAMEKSRSQY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00179 319 ProSiteProfiles PB1 domain profile. 198 301 IPR000270 GO:0005515
Vian9g00179 319 FunFam Auxin-responsive protein 193 311 - -
Vian9g00179 319 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 43 306 IPR003311 GO:0005634|GO:0006355
Vian9g00179 319 Pfam AUX/IAA family 47 310 IPR033389 -
Vian9g00179 319 Gene3D - 192 313 - -
Vian9g00179 319 SUPERFAMILY CAD & PB1 domains 197 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00179 Vian-Chr9 1442159 1444150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00179 186 304 B3 DNA Binding Superfamily AT2G46530 34.167 6.00e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian9g00179 AUX_IAA 2.5e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00179 K14484 - gmx:100804782 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00179 9 1442159 1444150 Vian9g00179 9 1442159 1444150 ECH