Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00176 ATGATGGCTGGCAACCCTAACTGGTGGACTACTCATCCACCATCTTTGATCCCTCCCCAGTATGTTCTTGGATCTTCTTCAATACCTTTCAATTCTTCCACACAAAACCCTGATCATGAGCCTCCTCCCTCATTGAGCCAACTTCTTTTCACTGGTTTACCGGGAGAGGAGGAGAGAGTGGCATTCAGTCATTTTCAATCGAAAAAGTTGGATGAATGGAATGAGCACATGCTTAATCCACCCCCCATAAATCCTATGGTTGATGTAATAAAGCAAGAGGTTTCCCAAAGTGGTAGCTTCTATCACCAGGGACATGATCAGGAATTTCAGGTTTCTGGAGCTCCTTGGTCACACATGGTGCCTGTTTCTTCTTCTCCTATGTCTAGTGTTGTTGCTAGCTTCAGTAGTAATAATTTATTGGATTTCACTTATAACAAGGAAGATCATAGGAAGAACCAACTACCAGATCACACATCCGAGTGTAATACCACAGCAAGCGCTGGAGTTTTCAAGAAGACTAAGTGTCAACCATCTTCAAGCCAACCACCTCTCAAGGTGAGAAAGGAGAAGCTAGGTGATAGAATAACAGCCCTTCACCAGCTAGTTTCCCCATTCGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGGCTCTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTCAACAGGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGATGCAAAAGATAAGCCAAAGGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCTGTGTCTTGTACCCAGCATGTTGGAAATGAAAATGGAGCTGATTACTGGGCACCGGCATATGGCAGTGGATTTTAA 969 0.4427 MMAGNPNWWTTHPPSLIPPQYVLGSSSIPFNSSTQNPDHEPPPSLSQLLFTGLPGEEERVAFSHFQSKKLDEWNEHMLNPPPINPMVDVIKQEVSQSGSFYHQGHDQEFQVSGAPWSHMVPVSSSPMSSVVASFSSNNLLDFTYNKEDHRKNQLPDHTSECNTTASAGVFKKTKCQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGNGSKNMRNPQSQQVHGERNSVFPEDPGQLLNDNGLKRKGAPNQDAKDKPKDLRSRGLCLVPVSCTQHVGNENGADYWAPAYGSGF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00176 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Vian9g00176 322 MobiDBLite consensus disorder prediction 239 289 - -
Vian9g00176 322 Gene3D - 185 243 IPR036638 GO:0046983
Vian9g00176 322 FunFam Transcription factor bHLH123 family 185 248 - -
Vian9g00176 322 MobiDBLite consensus disorder prediction 239 255 - -
Vian9g00176 322 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 304 - -
Vian9g00176 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 236 IPR036638 GO:0046983
Vian9g00176 322 CDD bHLH_AtbHLH_like 185 232 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00176 Vian-Chr9 1416102 1418519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00176 139 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 60.000 3.21e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00176 - - gmx:100802121 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00176 9 1416102 1418519 Vian9g00176 9 1416102 1418519 ECH