Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00159 ATGTCGTCTCCGTCGCCGGCGGAGACTCCTTCCGGCACGAACTCCACTACCTCTCCTCCTCCTCCTCCTCCTCCGGATGAAACACCTCTCGTACCTAATGCCACTGTCTCCCCTCCTCCGCCTCCCGACATCACCAGTGCCGCCGTTAGTCCTCCTCCGCCGTTAGCCGCAGCTCCGTCGAGTCTCAGTGGCGGCGGGTTGTCGCCGGCTACATTGAGTGGAATAATTATAGGAGCCGTGTTAGGTGCAGTAGGTATGCTTATAGTTGGGGGCGTTTTCTTTTGCGTCTATAGGAATTGGAAAAAGAAGAGAAGCCAGAACAACTACTCTCAACCGTCCCAACAGAAAGTTGACATGGCTTGTGTTTCTCCAACGCCAGATGGAAAAGTAGGCTTGTCCAAGCCTACACCAGGGGGTTTAGGGAATCAGAAACTGTCATCCTCTGGTCTCCCCACACCCACTGTCAATTCCTCAGGCACTGCAAGTAGTTGGGGTTCCGAGAAGGTGAAGCCTTCACCTGGCATTTCCTTGGCGCTATCTCAAAGCAGTTTTACACACGATGAATTAGTTATGGCAACGGATGGATTCTCCTACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTCCATGCAGAAGTCGATGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCCCTTGTTGGTTACTGCATATCAGACAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATAATACACTAGAATTTCATTTGCATGGAAAAGACAGACCACCTATGGACTGGTCAACAAGGATGAAGATTGCTATAGGATCTGCAAAAGGATTGGCATATCTGCATGAAGACTGTAATCCCAAAATCATACACCGAGACATCAAGGCATCTAACATTCTTATTGATGATAGCTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCATCAGACACAGAAACACATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTAACAGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTGTTGGAGTTGATTACTGGACGGAAACCCGTTGATAAAACTCATCCCTTCTTAGATGACAGCATGGTTGAATGGGCTAGGCCTTTACTCTCTCAAGCGTTTGAGAATGGAAACTTTGATGGACTTCTTGATCCAAAGTTGCAGAAAAATTACAATCATGATGAGATGATTCGAATGGCCGCTTGTGCTGCAAGTTGTGTGCGCCATTCAGCCAGGCTTCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTGGAAGGAAATATTTCTCTAGAAGATCTAAATGAGGGGAGTGCTCCTGGACACAGCAGAGTTTTTGGTTCCTTTGAGGGTTCTAGCTATGACAGCGTCCAATACAGTGAGGACATGAAGAACTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCAAGGTATTAGTGAGTACAGTGGTCCCAGCAGTGATTACGGTCGACATCCATCTGTCTCTACCAGTTCGGGACAGCAAAATACGCAGGAAATTGAATTGGGGGAGCGTGAACGGTAG 1674 0.4743 MSSPSPAETPSGTNSTTSPPPPPPPDETPLVPNATVSPPPPPDITSAAVSPPPPLAAAPSSLSGGGLSPATLSGIIIGAVLGAVGMLIVGGVFFCVYRNWKKKRSQNNYSQPSQQKVDMACVSPTPDGKVGLSKPTPGGLGNQKLSSSGLPTPTVNSSGTASSWGSEKVKPSPGISLALSQSSFTHDELVMATDGFSYSNLLGQGGFGYVHKGVLPNGKIVAVKQLKSESRQGEREFHAEVDVISRVHHRHLVSLVGYCISDNQKMLVYEYVPNNTLEFHLHGKDRPPMDWSTRMKIAIGSAKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTHPFLDDSMVEWARPLLSQAFENGNFDGLLDPKLQKNYNHDEMIRMAACAASCVRHSARLRPRMSQVVRALEGNISLEDLNEGSAPGHSRVFGSFEGSSYDSVQYSEDMKNFRKLALESQEQGISEYSGPSSDYGRHPSVSTSSGQQNTQEIELGERER 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00159 557 FunFam Proline-rich receptor-like protein kinase PERK8 168 271 - -
Vian9g00159 557 Pfam Protein tyrosine and serine/threonine kinase 199 468 IPR001245 GO:0004672|GO:0006468
Vian9g00159 557 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 87 516 IPR047117 -
Vian9g00159 557 ProSitePatterns Protein kinases ATP-binding region signature. 202 224 IPR017441 GO:0005524
Vian9g00159 557 MobiDBLite consensus disorder prediction 105 169 - -
Vian9g00159 557 SUPERFAMILY Protein kinase-like (PK-like) 171 469 IPR011009 -
Vian9g00159 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Vian9g00159 557 Gene3D Transferase(Phosphotransferase) domain 1 272 481 - -
Vian9g00159 557 MobiDBLite consensus disorder prediction 519 549 - -
Vian9g00159 557 MobiDBLite consensus disorder prediction 1 64 - -
Vian9g00159 557 MobiDBLite consensus disorder prediction 139 169 - -
Vian9g00159 557 ProSiteProfiles Protein kinase domain profile. 196 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00159 557 FunFam Proline-rich receptor-like protein kinase PERK1 272 480 - -
Vian9g00159 557 Gene3D Phosphorylase Kinase; domain 1 160 271 - -
Vian9g00159 557 MobiDBLite consensus disorder prediction 105 120 - -
Vian9g00159 557 SMART serkin_6 196 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00159 557 MobiDBLite consensus disorder prediction 15 58 - -
Vian9g00159 557 MobiDBLite consensus disorder prediction 515 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00159 Vian-Chr9 1290153 1294329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00159 14 543 Trihelix Transcription Factor Family AT1G70460 50.372 5.17e-164 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vian9g00159 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00159 - - ccaj:109808169 840.106