Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00148 ATGGTTCAATTATCCTCTAAGAAATGGGTCCCCAAAGGTTGCAAGCATCCTAGGACTTCTTCTATCGACATGGACAGCAACAAAAACATCACCAAAAAAAACACCACCAACGCCAAGGACGACGAAGCCATGTTAGCAGACATTGATCGCTTTCTCATCGAGAATTTCAAGAACCTATTCCTCGATCGTGAAGAAACCACCACCAACAATGAATCCAAAGAACAAAATTCTCCCAAACTAGACTCTGTCAGATTTGACTCTTCTCTAAGGTTCGATGATTCGCCACTGAACCTCTACACAGACACAACAACCGAAGCAGGACTATCCAGTTTGACCATGTCTGAGCCCGAGAGCACGGAGGAACAAACCACCGTTCTGAGTAATTGCGTGGTGGTTTTGGCCAACTCCGCCAGACCCACCGAGGATTTCCGTCGGTCCATGGAGGGCATGGTTGAAGCAAGATTGAAGAAGAGTGAAAAGGTAGATTGGGGCTTCATGCAGGAGCTTTTGTTCTGTCACATGAATCTGAACCAGAAGAAGTGGCACAAGTTCATTCTCAGCGCCTTCGTGGATATCGCCACCACCCTCCGCCAGACACCGGAGATTTCTCCGGCGAACCCCCAGCCGCCGCGGAGCGTTCGGACTGTTAGGATCGGAAGAGAAGTGAGGAAGAAGACAAAGGAAGCAATCACCTTGGAATTTGGGTCACCCTAA 714 0.4874 MVQLSSKKWVPKGCKHPRTSSIDMDSNKNITKKNTTNAKDDEAMLADIDRFLIENFKNLFLDREETTTNNESKEQNSPKLDSVRFDSSLRFDDSPLNLYTDTTTEAGLSSLTMSEPESTEEQTTVLSNCVVVLANSARPTEDFRRSMEGMVEARLKKSEKVDWGFMQELLFCHMNLNQKKWHKFILSAFVDIATTLRQTPEISPANPQPPRSVRTVRIGREVRKKTKEAITLEFGSP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00148 237 Pfam Transcriptional repressor, ovate 136 196 IPR006458 -
Vian9g00148 237 ProSiteProfiles OVATE domain profile. 132 195 IPR006458 -
Vian9g00148 237 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 36 196 IPR038933 GO:0045892
Vian9g00148 237 NCBIfam uncharacterized plant-specific domain TIGR01568 130 197 IPR006458 -
Vian9g00148 237 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00148 Vian-Chr9 1202070 1202943 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vian9g00148 Ovate 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00148 - - var:108320446 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00148 9 1202070 1202943 Vian9g00148 9 1202070 1202943 ECH
Vian11g00153 11 1357105 1357962 Vian9g00148 9 1202070 1202943 PCT