Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00144 ATGGAAATCCATAAGGTTCAGCTGCCACCAGAACGAACCACCTTGCAGAAACTGAGACACAGACTCTCTGAGATCTTCTTCCCAGATGACCCTCTTCACAGGTTCAAGAACCAAACTTGCTTCATGAAACTTCTCCTTGCTCTCCAATACCTCTTCCCCATTTTCCAATGGGCCCCTCTCTACAACCTTTCTCTTCTCCGCTCTGACATGATCTCAGGTCTCACCATTGCAAGCCTCGCCATTCCTCAGGGTATCAGCTATGCTAAGCTAGCAAACTTGCCACCCATTCTTGGATTATATTCTAGTTTTGTGCCTCCGTTGATATATTCCTTGCTTGGGAGTTCTAGACATCTGGGTGTTGGTCCAGTTTCAATTGCATCTTTAGTCATGGGATCAATGTTAACAGAGACAATTTCTTATACTCAAGATCCTATTCTCTATCTCAAAATGGCTTTCACTGCCACTTTTTTTGCTGGTTTGTTCCAATCTTCTCTGGGTATATTAAGGTTAGGCTTTGTGATTGATTTTCTCTCAAAGGCAACTCTGGTAGGTTTCATGGCTGGTGCAGCGATTATTGTGTCACTGCAGCAGCTGAAAGGGTTGCTTGGAATAGTTCATTTCACCAACAAGATGCAAATAACGCCTGTGCTTATCTCTGTTTTCAAGCAAAGAGAAGAGTGGTCATGGCAAAACCTTCTGCTGGGATTCAGTTTCCTGCTATTCCTGTTGACAACAAGGCACATTAGCTTGAGGAAGCCAAAATTATTCTGGGTTTCAGCAGCTGCCCCGTTGACATCAGTCCTTCTGTCAACCATTTTAGTATTTCTTCTGAGAAATAAGGCCCATAAAATTGCCATTATCGGTGAATTGCCAAAAGGACTGAATCCACCATCATCAAACATGTTATACTTCAATGGTCCTTATTTGGCTCTTGCTCTCAAAACAGGACTTGTCACTGGGATTTTGTCTCTCACTGAAGGAATTGCAGTGGGAAGAACATTTGCTGCACTGAAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCCATTGGTCTTATGAACATAGCTGGTTCTTGTTCTTCATGCTATGTCACAACAGGGTCATTTTCTCGATCAGCTGTTAACTTCAATGCTGGGGCAGAGACAGCAGTATCAAATATAATCATGGCATCGGCAGTTCTTGTGACCCTTTTGTTTCTGATGCCGCTGTTCTATTACACACCGAATGTAGTCTTAGGAGCCATTATAATCACTGCTGTTGTAGGGCTAATAGATTATCAAGCTGCATATAAATTGTGGAAGGTTGACAAGCTTGACTTCTTGGCCTGCTTGTGCTCCTTTTTCGGTGTTCTGTTCATTTCAGTGCCTCTTGGCCTTGGAATAGCGGTGGGAATATCAGTCTTCAAGATCTTGCTTCATGTCTCTAGGCCAAACACACTGGTTTTGGGGAATATACCGGGGACGCCAATATTCCACAACCTAAACCAATATAGAGAAGCTTTGAGGATTCCTTCGTTTATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCTAATTCAACGTACCTGCAAGAAAGGATACTGAGATGGGTTCGAGAAGAGGAAGAGCGAGTAAAAGCAAACAATGAAAGTACATTGAAGTGTATAATTTTGGACATGACGGCTGTTACAGCCATAGACACAAGTGGAATCGATACTCTATGTGAACTTAGGAAGGTGCTGGACAAAAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGGGAATGTGATGGAAAAGTTGCATCAGTCAAATATTTTGGATTCCTTTGGGTTGAAAGGTGTCTATCTCACTGTTGGAGAAGCTGTGGCTGACATTTCATCTTCATGGAAAGCTCAGCCTTGA 1887 0.4282 MEIHKVQLPPERTTLQKLRHRLSEIFFPDDPLHRFKNQTCFMKLLLALQYLFPIFQWAPLYNLSLLRSDMISGLTIASLAIPQGISYAKLANLPPILGLYSSFVPPLIYSLLGSSRHLGVGPVSIASLVMGSMLTETISYTQDPILYLKMAFTATFFAGLFQSSLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQITPVLISVFKQREEWSWQNLLLGFSFLLFLLTTRHISLRKPKLFWVSAAAPLTSVLLSTILVFLLRNKAHKIAIIGELPKGLNPPSSNMLYFNGPYLALALKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNFNAGAETAVSNIIMASAVLVTLLFLMPLFYYTPNVVLGAIIITAVVGLIDYQAAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVGISVFKILLHVSRPNTLVLGNIPGTPIFHNLNQYREALRIPSFIILAVESPIYFANSTYLQERILRWVREEEERVKANNESTLKCIILDMTAVTAIDTSGIDTLCELRKVLDKRSLQLVLANPVGNVMEKLHQSNILDSFGLKGVYLTVGEAVADISSSWKAQP 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00144 628 PANTHER SULFATE TRANSPORTER 17 620 IPR001902 GO:0016020|GO:0055085
Vian9g00144 628 Gene3D STAS domain 477 622 IPR036513 -
Vian9g00144 628 ProSitePatterns SLC26A transporters signature. 95 116 IPR018045 GO:0008271|GO:0008272
Vian9g00144 628 FunFam Sulfate transporter 31 477 623 - -
Vian9g00144 628 NCBIfam sulfate permease 53 616 IPR001902 GO:0016020|GO:0055085
Vian9g00144 628 Pfam STAS domain 498 616 IPR002645 -
Vian9g00144 628 Pfam Sulfate permease family 66 445 IPR011547 GO:0016020
Vian9g00144 628 ProSiteProfiles STAS domain profile. 497 620 IPR002645 -
Vian9g00144 628 CDD STAS_SulP_like_sulfate_transporter 498 613 - -
Vian9g00144 628 SUPERFAMILY SpoIIaa-like 502 619 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00144 Vian-Chr9 1168436 1173006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00144 1 628 Inorganic Solute Cotransporters AT3G15990 76.032 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00144 K17471 - gmx:100780331 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00144 9 1168436 1173006 Vian9g00144 9 1168436 1173006 ECH
Vian11g00147 11 1312504 1317567 Vian9g00144 9 1168436 1173006 PCT