Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00135 ATGAAGAAGGAAAGCAGTGTTACACTGAAAACTGGGGAGCTATCTGGTCGAGTGACACGGGCTCGGGCTGCTGCTCATTGCTCATCAGGAAAGCTACCCCCTTTGAAAGAGAGATCACAGCAAAATCAGAAGCAGTTATCCAGAGTCAATTCAAAAAGAGCAGCTTCTGATAATACATGTGTTCCTCGTAAAAAAAGGACCGTTCTTCAGGATGTTACTAATGTTTGCTGTGAAAATGTGTACACGAGTTGTGTCAACTCAAATAAAATTCAGGCTAAGAAAAGAAAGCTGTCTAAGGCTGCTCAAGTTTATGTGTCCAAAGAACCTTCTGTTGCTGTAGACTCACTGCAATTTCAAGCTGACTCCAAAGCAAAAAGTTTACAGGAAACGGCTTTGAAATCAGAAGATACTATGTGCTCAATTAATTTGGAACACAGAGAACTTCTCCGGCCAAGTTCCAATGACTGTAACATGGATGTTCGATTGCCTGAAAGTCAGATGTCTGGAATATCTGGTCAACCTTTGATTTCTCAGAATAAAGACAAGAAAGGTAACCTTTCGAAAGTTTTAACTGCGTGGAAGGATCAAGACGTCACTAGCATAGACGATGATCTTGGAGATCCTCTATTGTGCAGCCTCTATGCTGCTGATATCTACGACACCATGCGTGTTGCTGAGCTTGCAAGAAGGCCTTATCCTAATTTTATGGAGATGGTGCAGCGAGATATCACTCAAAGCATGCGTGGAATACTGGTTGATTGGCTTGTAGAGGTTTCGGAGGAATACAAATTGGTTACAGACACTCTTTACCTCACTGTGTACCTCATAGATTGGTTCCTCTCCAAAAACTACATTGAAAGACAGAGACTTCAGCTACTTGGTATCACCTGCATGCTAATTGCCTCGAAGTACGAAGAAATTAATGCGCCACGTATTGAAGATTTCTGCTTCATTACAGACAATACATACACCAAAGCTGAGGTGCTGAAAATGGAGAGTCAAGTGTTGAAGTCATCTGAATATCAACTGTTTGCTCCCACTATAAAAACATTTCTCAGGAGGTTTCTTCGGGCAGCACAAGCTTCATACAAGGATCCAAACCTTGAATTAGAGTACCTGGCCAATTACCTTGCTGAACTAACACTCATGGACTATGGTTTCTTGAATTTCCTTCCTTCTATCATTGCTGCATCAGCAGTGTTTCTTGCCTTGTGGACACTGGATCAGTCAAACCATCCATGGAATCCAACTCTTGAACACTATGCCAGTTACAAAGCATTAGATTTGAAAACCACAGTTCTTGCATTGCAAGACCTGCAGCTGAATACTGATGGTTGCCCTCTAACTGCCATTCGCACAAAATATAGACAAGACAAGTTCAAGTGTGTAGCAGCTCTGTCTTCACCAAAACTGCTTGAAACTTTGTTCTGA 1431 0.4186 MKKESSVTLKTGELSGRVTRARAAAHCSSGKLPPLKERSQQNQKQLSRVNSKRAASDNTCVPRKKRTVLQDVTNVCCENVYTSCVNSNKIQAKKRKLSKAAQVYVSKEPSVAVDSLQFQADSKAKSLQETALKSEDTMCSINLEHRELLRPSSNDCNMDVRLPESQMSGISGQPLISQNKDKKGNLSKVLTAWKDQDVTSIDDDLGDPLLCSLYAADIYDTMRVAELARRPYPNFMEMVQRDITQSMRGILVDWLVEVSEEYKLVTDTLYLTVYLIDWFLSKNYIERQRLQLLGITCMLIASKYEEINAPRIEDFCFITDNTYTKAEVLKMESQVLKSSEYQLFAPTIKTFLRRFLRAAQASYKDPNLELEYLANYLAELTLMDYGFLNFLPSIIAASAVFLALWTLDQSNHPWNPTLEHYASYKALDLKTTVLALQDLQLNTDGCPLTAIRTKYRQDKFKCVAALSSPKLLETLF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00135 476 SUPERFAMILY Cyclin-like 346 471 IPR036915 -
Vian9g00135 476 Gene3D - 231 344 - -
Vian9g00135 476 MobiDBLite consensus disorder prediction 1 59 - -
Vian9g00135 476 Pfam Cyclin, N-terminal domain 217 342 IPR006671 -
Vian9g00135 476 Gene3D - 217 465 - -
Vian9g00135 476 PIRSF Cyclin_A_B_D_E 24 475 IPR046965 GO:0016538|GO:0044772
Vian9g00135 476 FunFam Mitotic cyclin 6 231 331 - -
Vian9g00135 476 FunFam Cyclin A1 333 465 - -
Vian9g00135 476 CDD CYCLIN_AtCycA_like_rpt1 207 342 - -
Vian9g00135 476 CDD CYCLIN_AtCycA-like_rpt2 346 460 - -
Vian9g00135 476 MobiDBLite consensus disorder prediction 34 57 - -
Vian9g00135 476 PANTHER CYCLINS 153 457 IPR039361 -
Vian9g00135 476 Pfam Cyclin, C-terminal domain 346 468 IPR004367 -
Vian9g00135 476 SMART Cyclin_C_2 346 469 IPR004367 -
Vian9g00135 476 SUPERFAMILY Cyclin-like 206 342 IPR036915 -
Vian9g00135 476 SMART cyclin_7 253 337 IPR013763 -
Vian9g00135 476 SMART cyclin_7 350 438 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00135 Vian-Chr9 1048694 1052775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00135 1 476 Core Cell Cycle Gene Families AT1G80370 55.123 2.41e-171 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00135 K06627 - gmx:100789757 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00135 9 1048694 1052775 Vian9g00135 9 1048694 1052775 ECH