Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00103 ATGAAAAAGTGGTTAGCAGAAGAAGCAGTAGTTAAACTGGTGTGCAGTGTTAAAGGGAAAAGAAGGGTGTGGCTTGGGACATTCGAGACAGCCGAGGAAGCAGCAAGAGCATACGATGAAGCAGCCATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAGGTTTTGAATCACAGCACTTCCTCTTCTTCATCTTCCACCTCTACATTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGCTGCAAATCTCCCTCACCTTCCCTCACTTGCCTGAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAACTGGATCATGATGGTTGAGTTGGAAAAAAAGAACAGCGAGGGTGATCATGATCATGATCATGATCAAGATCAAGATCAAGATCAAGGTCGTTCTTCTGATTCTGAAGTTCCTGTTGTTGTTGTTGATCATCATGCTCCAGAGAAGATAAAGCCTGAGGAAGGTAATGGATTAGATGAGGAGCAGAGAATGGCTCTGCAGATGATAGAGGAGCTTCTGAATAGGAATTGA 591 0.4501 MKKWLAEEAVVKLVCSVKGKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQVLNHSTSSSSSSTSTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELEKKNSEGDHDHDHDQDQDQDQGRSSDSEVPVVVVDHHAPEKIKPEEGNGLDEEQRMALQMIEELLNRN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00103 196 Pfam AP2 domain 2 46 IPR001471 GO:0003700|GO:0006355
Vian9g00103 196 ProSiteProfiles AP2/ERF domain profile. 1 55 IPR001471 GO:0003700|GO:0006355
Vian9g00103 196 Gene3D AP2/ERF domain 2 56 IPR036955 GO:0003700|GO:0006355
Vian9g00103 196 MobiDBLite consensus disorder prediction 133 151 - -
Vian9g00103 196 SMART rav1_2 3 61 IPR001471 GO:0003700|GO:0006355
Vian9g00103 196 MobiDBLite consensus disorder prediction 161 181 - -
Vian9g00103 196 CDD AP2 3 56 IPR001471 GO:0003700|GO:0006355
Vian9g00103 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 146 - -
Vian9g00103 196 MobiDBLite consensus disorder prediction 133 181 - -
Vian9g00103 196 SUPERFAMILY DNA-binding domain 16 56 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00103 Vian-Chr9 816979 821668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00103 20 196 AP2-EREBP Transcription Factor Family AT1G15360 55.615 7.25e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian9g00103 AP2 6.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00103 - - gmx:100796962 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00103 9 816979 821668 Vian9g00103 9 816979 821668 ECH